Re: [Freesurfer] Insula gyral and sulcal images

you subject, in the ?h.aparc.a2009s.stats files. Sincerely -- Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.inserm.fr/ Service de Neurochirurgie et Laboratoire d'Anatomie - Faculté de Médecine -

Re: [Freesurfer] FreeSurfer Courses 2015

Hi we will organize one in Tours, Loire Valley France next may, with the Boston team sincerely Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.inserm.fr/ <http://www.u930.tours.inserm.fr/> Serv

[Freesurfer] FreeSurfer Course Tours, France, 26-27/05/2016

This course will be organized in the Ecole Polytechnique de l'Université de Tours For online registration, please visit : http://freesurfer2016.sciencesconf.org/?lang=en See you in Tours next May C Destrieux, F Andersson, L Barantin, S Love, M Sta, C Tauber Christophe Destri

Re: [Freesurfer] Planum temporale measurement

segment of the lateral fissure I hope it helps — Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours Service de Neurochirurgie Laboratoire d’Anatomie, Faculté de Médecine, 10 Bd Tonnellé - 37032 Tours - France Bureau: +33 2 47 36 61 36 | Fax

Re: [Freesurfer] FreeSurfer Course Tours, France, 26-27/05/2016

Dear Caroline could you please resend it in english or in French ; I’m not too familiar with Flamish ; ) thanks Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.inserm.fr/ <http://www.u930.tours.inserm

Re: [Freesurfer] FreeSurfer Course Tours, France, 26-27/05/2016

Bon problem ; I guessed it was something like this ; ) Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.inserm.fr/ <http://www.u930.tours.inserm.fr/> Service de Neurochirurgie et Laboratoire d&#x

Re: [Freesurfer] Reference about: MeanCurv, GausCurv, FoldInd, CurvInd?

this was : Van Essen, D.C., Drury, H.A., 1997. Structural and functional analyses of human cerebral cortex using a surface-based atlas. J Neurosci 17, 7079–102. Cheers — Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours Service de

[Freesurfer] Freesurfer course in Tours, France, 26-27 May 2016

participants and will focus on surface-based analysis of individual and group morphological data and on tractographic analysis using FreeSurfer tools. See you in Tours next May! Registration and information : http://freesurfer2016.sciencesconf.org/?lang=en — Christophe Destrieux, Unité « Imagerie et

Re: [Freesurfer] Merging PArcellation labels

Hi did you look at : https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2010-June/014620.html cheers -- Christophe Destrieux, Directeur du Département Communication et Multimedia http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612 Unité « Imageri

Re: [Freesurfer] Where does a sulcus end and a gyrus begin in FreeSurfer?

cortical gyri and sulci using standard anatomical nomenclature. Neuroimage 2010; 53: 1-15. cheers -- Christophe Destrieux, Directeur du Département Communication et Multimedia http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612 Unité « Imagerie et Cerveau »

Re: [Freesurfer] freesurfer atlases/versions

Hi Narly You are right: The anatomical parcellation is the same (aparc.a2009s) as the one included in the 4.5 FS version (see also http://surfer.nmr.mgh.harvard.edu/fswiki/DestrieuxAtlasChanges). Cheers -- Christophe - Mail original - > De: "Narly Golestani" > À: freesurfer@nmr.mg

Re: [Freesurfer] Tracula preprocessing step error

ator; " as text separator, "unicode UTF-8" as encoding cheers -- Christophe Destrieux, Directeur du Département Communication et Multimedia http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612 Unité « Imagerie et Cerveau » UMRS INSERM U930, Un

Re: [Freesurfer] Divisions for "anterior" and "posterior" insula?

Hi Nassim I would say : > Anterior insula = "G_insular_short" > Posterior insula = "G_Ins_lg_and_S_cent_ins" I wouldn't add the circular sulcus of the insula which limits it from the surrounding frontal, parietal and temporal opercula cheers > -- Ch

Re: [Freesurfer] Definition of medial temporal lobe

-- Christophe Destrieux, - Mail original - > De: "Akshay" > À: freesurfer@nmr.mgh.harvard.edu > Envoyé: Lundi 18 Mars 2013 14:59:03 > Objet: [Freesurfer] Definition of medial temporal lobe > Hello freesurfer experts, > I am doing some TBM analysis and I a

Re: [Freesurfer] Zeroes for few regions in 'aparc.a2009s' parcellation.

External Email - Use Caution Hi Bruce and Vittal could be, but looks strange to me since the listed sulci seems quite consistant to me. Vittal could you put one of these subjets somewhere ; I could look at their cortical folding best — Christophe Destrieux, Unité « Imagerie

Re: [Freesurfer] insula on medial surface

h the 2009a atlas? cd -- Christophe Destrieux, Directeur du Département Communication et Multimédia http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612 Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.

Re: [Freesurfer] insula on medial surface

gyri). - Since ?h.aparc.DKTatlas40.annot insula label includes the long and short insular gyri but also part of the circular sulcus, its size is a bit larger than the sum of the long and short insular gyri of the ?h.aparc.a2009s.annot parcellation I hope it helped ; cheers -- Christophe Dest

[Freesurfer] PhD position avalaible in Torus, France : hisgh resolution Brainstem atlas

tem-638411.kjsp?RH=1381307896713> Do not hesitate to distribute Christophe Destrieux, Unité iBrain UMRS INSERM U1253, Université de Tours http://www.u930.tours.inserm.fr/ <http://www.u930.tours.inserm.fr/> Service de Neurochirurgie et Laboratoire d'Anatomie - Faculté de Médecine

[Freesurfer] Medial prefrontal cortex mPFC in Destrieux Atlas

as ? > > Also for lateral parietal cortex .. > > Than you, > Daiana Christophe Destrieux, Unité iBrain UMRS INSERM U1253, Université de Tours https://ibrain.univ-tours.fr/ <https://ibrain.univ-tours.fr/> Service de Neurochirurgie et Laboratoire d'Anatomie - Faculté

[Freesurfer] 'lh_G_Ins_lg&S_cent_ins_volume' and 'lh_G_insular_short_volume'

e list of anatomical classes and explanations on their anatomical meaning see : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937159/ Best Christophe Destrieux, Unité iBrain UMRS INSERM U1253, Université de Tours https://ibrain.univ-tours.fr/ <https://ibrain.univ-tours.fr/> Service de Neu

[Freesurfer] What is "...S_central" in Destrieux atlas?

External Email - Use Caution Right See https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937159/ <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937159/> , table 1 Best > > Christophe Destrieux > Laboratoire d'anatomie - Faculte de Medecine > 10, bd Tonnell

Re: [Freesurfer] Insula annotation on cortical surface

anatomical description of these labels, you can have a look to : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937159/?tool=pubmed cheers -- -- Christophe Destrieux, Directeur du Département Communication et Multimedia http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=120065115

Re: [Freesurfer] Destrieux atlas 2002

an_tempo] since they are made of secondary auditory cortex you can have a look to - http://surfer.nmr.mgh.harvard.edu/fswiki/DestrieuxAtlasChanges and - http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937159/?tool=pubmed I don't know if it helps cheers -- Christophe Destrieux, Dire

Re: [Freesurfer] mri_extract_label 4181

ike 4181wm-rh-S_temporal_transverse I tried every segmentation file I found (aparc+aseg.mgz, wmparc.mgz, aparc.a2005s+aseg.mgz), but only ended up with empty maps. Where I can find or how can I create the necessary segmentation volume? Regards, Markus -- Christophe Destrieux Laborat

Re: AW: [Freesurfer] mri_extract_label 4181

7;t found something else. The problem is not subject-related. Regards, Markus -Ursprüngliche Nachricht- Von: Christophe Destrieux [mailto:[EMAIL PROTECTED] Gesendet: Mittwoch, 10. Dezember 2008 14:24 An: Bruce Fischl Cc: Markus Röhl; freesurfer@nmr.mgh.harvard.edu Betreff:

Re: [Freesurfer] Destrieux or Desikan/Ron Killiany

te main part, and only a very small part of it extends into > > SFG. > > These are substantially different interpretations. Is one atlas more > > accurate in this region? > > > > > > Thank you! > > > > -- Christophe Destrieux Laboratoire d'Anato

[Freesurfer] test message

-- Christophe Destrieux Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvar

Re: [Freesurfer] cortical label values

https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Christophe Destrieux Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07 0 Unknown 0 0 0 0 1 Corpus_callosum 50

Re: [Freesurfer] extract aparc.anot area

ot.a2005s” files and how to modify them manually? > > Thanks > > Grégory SIMON > > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu &

Re: [Freesurfer] Destrieux boundaries Insular cortex

Hi Lena Here is the link to the HBM 2009 poster : http://www.nmr.mgh.harvard.edu/martinos/publications/posters/HBM-2009/HBM09-Destrieux-Sulcal.pdf Following is the "insula" section of the paper we are going to publish "On the inflated view, the insula was clearly limited by the circular sulcu

Re: [Freesurfer] 2005 vs 2009 parcellations

r the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but do

Re: [Freesurfer] lh.aparc.a2005s: S_subcentral_ant label

er mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Christophe Destrieux Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé 37032 Tours - France tel (33) 2 47 36 61 36 - fa

[Freesurfer] Using Freesurfer's label files to create one ROI

surface and the annotation file. A field named annotation will be created on the interface with the RGV under brackets ** : the output annotation (the one you want to create, with labels grouped together) cheers -- Christophe Destrieux, Directeur du Département Communication et Multimedi

Re: [Freesurfer] Question about getting fusiform stats

Hi Brian I don't know which parcellation you are using, but in the sulco-gyral parcellation (aparc.a2009s.annot), the fusiform appears as "G_oc- temp_lat-fusifor" cheers -CD Le 8 juin 10 à 21:56, Weisinger, Brian (NIH/OD) [E] a écrit : Hello I am trying to retrieve the fusiform volumes of

[Freesurfer] aparc.a2005s.annot errors?

hope that it helped Le 24 juin 10 à 08:53, Christophe Destrieux a écrit : Hi Yigal I had a look to fsaverage. There are obviously some mislabelling creating small "holes", especially in the cingulate region. I suggest you to use the a2009s parcellation avalaibel in the 4.5 FS

Re: [Freesurfer] Any update on releasing the source for FreeSurfer?

t contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Christophe Destrieux, Directeur du Département Communication et Multimedia http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612 Laboratoire d'

Re: [Freesurfer] Description of frontal labels Destrieux 2009

on frontal measures derived from 2009 >> Destrieux atlas – I need to know the anatomical boundaries for >> frontomarginal, orbital H shaped sulcus, and the three inferior, >> middle and superior gyrus and sulcus: is there a place where I can >> find these descriptions?

Re: [Freesurfer] creation of special image...

--- > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is >

Re: [Freesurfer] question abt Destrieux atlas

Fellow > Department of Neurology > Center for Functional Neuroimaging > University of Pennsylvania School of Medicine > 3rd Floor Gates Building > 3400 Spruce St. > Philadelphia > Pa 19104 > > > -- Christophe Destrieux, Directeur du Département Communication et Multim

Re: [Freesurfer] Equivalent labels

automatically labelled on the surface. Nevertheless, Hippocampus is segmented by the volume autoparcellation. Similarly, Sulcus semi annularis was not correctly unfolded and was not labelled. Sorry about that -- Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, CNRS

Re: [Freesurfer] Equivalent labels

not that I know, except for hippocampus which is available on the volume segmentation Bruce : am I right? cheers -- Christophe Destrieux, Directeur du Département Communication et Multimedia http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612 Unité « Imag

Re: [Freesurfer] Equivalent labels

heers -- Christophe Destrieux, Directeur du Département Communication et Multimedia http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612 Unité « Imagerie et Cerveau » UMRS INSERM U930, CNRS ERL 3106, Université François Rabelais de Tours http://www.u930.tours.

Re: [Freesurfer] Unknown label in Parcellation

that's right -- Christophe Destrieux, Directeur du Département Communication et Multimedia http://med.univ-tours.fr/M0S01/0/fiche___defaultstructureksup/&RH=1200651159612 Unité « Imagerie et Cerveau » UMRS INSERM U930, CNRS ERL 3106, Université François Rabelais de Tours http:/

Re: [Freesurfer] S_intraparietal-and_Parietal_transverse.label

using standard anatomical nomenclature. ; Destrieux C, Fischl B, Dale A, Halgren E. ; Neuroimage . 2010 Oct 15;53(1):1-15 I let Bruce or Doug answer the second part of your question ; cheers PS I attached a snapshot of the 2009 parcellation for the same hemi -- Christophe Destrieux, Directe