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Assuming that you have set SUBJECTS_DIR to a path where you have
read/write permission, then I wonder if you have an alias defined in your shell
such that the rm command contains “-I” (the interactive switch) which would
force rm to ask you for perm
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Hi there,
I am trying to register my Freesurfer subject's cortical surface into a common
space to use the parcellations from a pediatric atlas (UNC 4D cortical surface
atlas).
With Freesurfer version 8.0.0 in a Linus OS, I am using mris_register as:
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Hello all
I’m running the recon-all tool :recon-all -all -sd . -subjid FS-i
${subj}_T1_al.nii
It works fine, but at some point, the program stops and asks at the terminal:
writing to orig_nu.mgz...
rm: descend into write-protected direct
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Dear support
I'm running samseg using Freesurfer 7.4.0. I'm using t1, t2 and flair as
input. I'm not sure if it's necessary to specify --lesion-mask-pattern but
if I try, I get an unrecognized flag error as it reads the second input to
--lesion-mask-pat
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Hello,
I'm trying to run the second step of TRACULA processing (in bash), which is:
trac-all -bedp -c /path/to/configuration/file
I'm currently using the FreeSurfer version v7.1.4 and I get the following error:
WARN: Running bedbostx locally - this m
