[Freesurfer] hounsfield units for some aseg.mgz labels

2025-02-17 Thread Gonzalo Rojas Costa
External Email - Use Caution Hi: I completed the co-registration of CT to a freesurfer processed MRI image using the command: mri_coreg --mov sub-OAS30001_sess-d3132_CT.nii.gz --reg reg.lta --s OAS30001_MR_d0757 How can I get the mean and SD hounsfield units of some aseg.mgz

[Freesurfer] ERC_bayesian_segmentation is not shipped in the nightly dev build

2025-02-17 Thread Chourrout, Matthieu
External Email - Use Caution Hi all, I was trying to run the dev version of FreeSurfer from https://secure-web.cisco.com/1WtBzDJVBe2-2xc-ZyLSEcxaAxh0X5-CzPpHRJlz_acv5Lg2Co0EGJYLwP6OBDHRg63AarvmIxE0A8xaw5eLhm85PxDEZIfauL2H74AL3ouYhV589IiaTEpBrb7SjubftgSKLaHlPqg2uOEkXCUBBQyQBM9mFD8

[Freesurfer] hounsfield units based in some aseg.mgz labels

2025-02-17 Thread Gonzalo Rojas Costa
External Email - Use Caution Hi: I completed the co-registration of CT images to a freesurfer processed MRI image using the command: mri_coreg --mov sub-OAS30001_sess-d3132_CT.nii.gz --reg reg.lta --s OAS30001_MR_d0757 How can I get the mean and SD Hounsfield units (from co

Re: [Freesurfer] ERC_bayesian_segmentation is not shipped in the nightly dev build

2025-02-17 Thread fsbuild
External Email - Use Caution That set of files is too large to be included in some packages.   Not sure what info you are following about pulling the files from GitHub, but for now you could try, - R. $ cd $FREESURFER_HOME/python/packages/ERC_bayesian_segmentation$ sudo wget htt