External Email - Use Caution Hi all,
I was trying to run the dev version of FreeSurfer from https://secure-web.cisco.com/1WtBzDJVBe2-2xc-ZyLSEcxaAxh0X5-CzPpHRJlz_acv5Lg2Co0EGJYLwP6OBDHRg63AarvmIxE0A8xaw5eLhm85PxDEZIfauL2H74AL3ouYhV589IiaTEpBrb7SjubftgSKLaHlPqg2uOEkXCUBBQyQBM9mFD8oSSdc4qN_Boyb58KuSaZ8lbRt3qQd2S8iClkPeALKa-6DWNgn_3CS9b02E-lLhjayDwk5OLqZ3dVYzYF-Fh-TzEaWAVf-17HiqyQzwFCRlkCB7s213kJxJm9ltwikSRiZmAw-dP0kwR6sD-5pXQ6pMjIwRstqFC6d8xisCWx8R_uQuH8VVbEzVdhRn5cMLWxSlEAk6XQ2ec88/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2Fdev%2F but the content from https://secure-web.cisco.com/1MMHkQC0FfiJGDyWJmsuvvc_IYxIL5eyKAe0D4iNTL8uZ9PJsGzUQorEDdoM85U72e9fxMZaXgIsZm34ZEmovbYdnjGlsNf9add6Z-HlVhwiQpVK5BD50UuxqFPJXqpTm3Taasi9fkLPwJ-5IpWWaT5JoYcTxJ23mX21stMlL_-vR1YEAj2sExKFEygyhnqKZjM6l2Zo4oNZRct862IDMaE9HhIkoM8lWuC617OPTD6V8O6QqUpa83pZtBXfoVVObTPB5Lnob0LnsTGKT6pwLmLaiMRjd4TJvz1hOwmAW24RqlJ6OkB5VF74_t9vktBnCE4C1Gm7lNnRA_4BMoZvXpO6oah1L5SsYu8MEjEWWEMo/https%3A%2F%2Fgithub.com%2Ffreesurfer%2Ffreesurfer%2Ftree%2Fdev%2Fmri_histo_util%2FERC_bayesian_segmentation is not present in ${FREESURFER_HOME}/python/packages/ As instructed, I've put atlas_full/ and atlas_simplified/ inside ${FREESURFER_HOME}/python/packages/ERC_bayesian_segmentation/ when trying to run mri_histo_atlas_segment_fireants but had to manually create the subdir. can't open file '/share/apps/freesurfer-dev/python/packages/ERC_bayesian_segmentation//scripts/segment_fireants.py': [Errno 2] No such file or directory Can the files from ERC_bayesian_segmentation/ in GitHub be manually pulled out into this directory? Which files are required? Best regards, Dr Matthieu Chourrout [orcid logo 16px] <https://secure-web.cisco.com/1-n5OFLL4s4yFn7XM1MH7qpzWv10xwrOxrYPwOpqLI0AgPpAR_svzzPHd0oKCrJzmBMX2fd_DH8tWLMhwbWETo8fYmXTcS91Y3eQ3pzykYVtgKzuowCoK4Lls1pNNjOgrK_3VVu3VbWswCS2SIbQbpaAYpiF-C4HN-JNy7d-hdPoHm9TqdkyuiX-lOssGCqbcHnZtUyx_Zr3BCK3PJmf4btg5hv8kT-nSYO1An8WMcrzSF9ToqBabl-dJnOJTJwRXIz62bcZLRs2gmI96Mq1ZrLDdSfyTqtCACHZp82W0zBT297YS798fpH9X-IEqLlY6zUkZzh88MOZM2EjvimjOeBlyQxDztYk5WRUQghd4EUM/https%3A%2F%2Forcid.org%2F0000-0002-2282-6976> Research Fellow on Correlative X-ray Imaging for the Large-scale Imaging of Neural Circuits UCL Mechanical Engineering<https://secure-web.cisco.com/10kRa1voAealTFL-mjMLpqi2JdO0FO-HEtTDRw-L3blsf8GMGxpATZStrVxvn4IqqpI13boo_UN-fZJMO3biYWaavU6ZUVmEq4zdVevIQhEW-gKMsR1a_rEX9tb6nw6zu-XGrbfThxs2sH8pVpsG1czY7u6xa7HPpNIKJ2d56WJuFBynovDqXS_rZ7phHECXXnaOU8Wy41aiFGbL35xB8qQ-3YqEnGt0DLBYOsHqtZ68R2lTFAUW_W5NPGo4ptSCSsCs5_5xTtsdGIPTWJYlTZuc7pqPjK4VcueokyFl7lHjibOGcDA-CaDIbLCTx1e7GGXqCLSK6O_GyLorpYisGpUY9aG6UYidxvkgVy-_iPJM/https%3A%2F%2Fwww.ucl.ac.uk%2Fmechanical-engineering%2F> Materials, Structure and Manufacturing at Harwell (MSMaH)<https://secure-web.cisco.com/1xdgUA8Zer-mG8V0D7hnqtYAAE7M6hmti3ln6qu7pf_60kUX8jfCW9ry4wu7gZf0CsN2Bqj7z5-YgWXq52xufHDbRQC5lvT-sCERYbrhKH1G3OwHZ_LZbq1aWnkL6mh33p6kkZsN9iPbmuyY_LdCcbs-ILAJkEc3-jcs2YWzJjhHiwtb0vybvP7jf-BmBCDYSCcvWoSxMMAv0deDavqInjEr2Dwvc4sLvihrKBm5GYqwM2C_vSnjTq5SymCDQzYHv2Tr7Kh5b6AY4PTE2vbtzaYsrU6XeDLXcMaI6UA-hfKjzwikgpmr98CDm9GpCxVN16gwiEHThynshGnviMYb5gz8InFiJYsnUKymPZp_qNGU/https%3A%2F%2Fwww.ucl.ac.uk%2Fmaterials-harwell%2Fmaterials-structure-and-manufacturing-harwell-activity%23%3A%7E%3Atext%3DLed%2520by%2520Professor%2520Peter%2520Lee,group%20with%20over%2030%20members.> Rm 4.17 Malet Place Eng. Building, Torrington Place, London, WC1E 7JE Bloomsbury Campus, University College London
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