[Freesurfer] Cortical Thickness Extraction after Dura Correction with Multi-echo MPRAGE

2025-02-10 Thread KEITH JONES
External Email - Use Caution Hello Freesurfer experts, I am interested in using Freesurfer 7.3.2 to extract cortical thickness values from multi-echo MPRAGE data. I ran recon-all using the T1 RMS and T2 images, and then I ran dura correction using the four T1 echo images to create

[Freesurfer] convert aal3 into .annot file

2025-02-10 Thread Vianney Salvi
External Email - Use Caution Dear all, To have the best use of freesurfer, I would like to convert the aal3 atlas ( [ https://secure-web.cisco.com/1Lqm9IW7wIlcxFf6HBv0-tMARacY0dOCxDHqgYcxMjc9ee0EoyUKGNqoVoky2xIh7MXTZKeNQnXZfSW5QqR9eUXTJPuaNy_lR6Mkvhg9qINmYS0lx45H5IbC-C7fgTnTzrL5