[Freesurfer] total intracranial volume

External Email - Use Caution Hi Freesurfers, I wanted to know if the Freesurfer volume results are already normalized by the total intracranial volume or if I should normalize it for each subject myself. Thanks for your answer,Yunus

[Freesurfer] Distance Measurement After recon-all

External Email - Use Caution Dear FreeSurfer experts, I would like to know if there is a command in FreeSurfer that can help me measure the distance (in voxels or mm) between a lesion mask and the closest voxels in the ribbon after applying recon-all to T1 images. Thanks for your a

[Freesurfer] 2 PhD positions in Prenatal programming of neurodevelopment in childhood

External Email - Use Caution Hello, I'm offering two PhD positions at the Faculty of Medicine, Masaryk University, Czech Republic, to study Prenatal programming of neurodevelopment in childhood. See more information at the links below and email me your CV at klara.mareck...@gmail.

Re: [Freesurfer] Doubts about GLM contrasts

External Email - Use Caution Great, thanks so much! But I am having difficulty understanding how to construct the contrast to answer the following question "Is the interaction between group (CU/CI) and cortisol significant regressing out the effect of sex, age, APOE_carrier, abet

[Freesurfer] How many regions does "aparc.DKTatlas+aseg.mgz" have?

External Email - Use Caution Hello FreeSurfer Developers, We ran recon-all on a 3D T1-weighted image, by default. ls *.nii | parallel -–jobs 2 recon-all -s {.} -i {} -all -qcache Our question is very simple. How many regions does "aparc+aseg.mgz" and "aparc.DKTatlas+aseg.mgz" and