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Hello FreeSurfer Developers,
We ran recon-all on a 3D T1-weighted image, by default.
ls *.nii | parallel -–jobs 2 recon-all -s {.} -i {} -all -qcache
Our question is very simple.
How many regions does "aparc+aseg.mgz" and "aparc.DKTatlas+aseg.mgz" and
"aparc.a2009s+aseg.mgz" have in each?
We checked the links below. And we want to renumber the region index from 0 as
shown in the photo below.
https://secure-web.cisco.com/1fBJMEihMTm8S1YZKy0FxnEoJxLOAxKaZC0-l90ulKxJmiTJlTMxY3q3ryv_7ts1uTTCPQdTCOXuEDbwL3_YFKQ9x83aJYfbcz7J81AdtRga---yQ-peSn5Fsu8zcLmGfTkyEBLwe7jTpR76XJKk8WD2KrGzdLzn-OGCPsb6KrE26Sry5Xtdonatr3zpx1586ZVun-Dfymo1VrwMbfxb50BE9Jrg_eO4NI1aY2u0E2Gb7sy0Z297RPfygrH9Q30T_pzzmgkx2eR0deWv8TDMkcMYeNHWrmhhENpTODcS5c85PLV66Hz7SIC-1D62zGk2eaK5kt2QcMtZN59t4JRmmXw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FAnatomicalROI%2FFreeSurferColorLUT
However, the number of regions varies slightly depending on the subjects
(103~106 in aparc.DKTatlas+aseg.mgz).
Therefore, we want to know the number of regions in three parcellation map.
1) FreeSurfer version: freesurfer-linux-ubuntu20_amd64-7.4.1.tar.gz
2) Linux ~~~ 5.15.0-76-generic #83~20.04.1-Ubuntu SMP Wed Jun 21 20:23:31 UTC
2023 x86_64 x86_64 x86_64 GNU/Linux
[cid:2d03e569-3221-4f8d-b86f-c8d38cf75b2e]
Thanks,
Kei
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