External Email - Use Caution
Dear Doug,
Please find the enclosed the output of mris_preproc and .log output of
terminal. I viewed the output in freevew as overlay, and again it seems that
values getting 0 after mris_preproc.
Thanks,
Reza
Fr
External Email - Use Caution
Hello,
When trying to run TRACULA on my data I keep getting the following error.
domainname: Command not found.
INFO: SUBJECTS_DIR is /Volumes/DANIEL/freesurfer_Tracy
INFO: Diffusion root is /Volumes/DANIEL/dti_Tracy/trac
Actual FREESURFER_HOME /Ap
Ouch. Is the aseg also like that?
Cheers,
/E
--
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
From: on behalf of Daniel Callow
Reply-To: Freesurfer support list
Date: Thursday, 8 August 2019 at 08:20
To: Freesurfer support list
External Email - Use Caution
Dear Juan Eugenio,
Thank you for these precisions.
Following the guidelines of FSL, I computed the following sequence on my
structural image :
bet my_structural my_betted_structural
flirt -ref ${FSLDIR}/data/standard/MNI152_T1_2mm_brain -in my_b
Please try using the 1mm version of the segmentation in FreeSurfer space.
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
From: on behalf of Jessica Bourgin
Reply-To: Freesurfer support list
Date: Thursday, 8 Au
Hi Fred - What program are you using to display these? Any chance that the
volumes are not actually all zero but that they're just not displayed correctly
for whatever reason?
Have you tried opening these two volumes in freeview at the same time?
/usr/share/fsl/5.0/data/standard/MNI152_T1_1mm
Hi Daniel - Can you please attach the dmrirc and trac-all.log files in their
entirety? Thanks!
a.y
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Daniel Callow
Sent: Thursday, August 8, 2019 9:07:31 AM
To: Freesurfer support list
Subject: [Freesu
External Email - Use Caution
Hi Freesurfer team,
I am transforming several adjacent surface labels into volume ROIs, using
*mri_label2vol*. When doing so, there seems to be some possibly unavoidable
overlap in a small number of voxels in the volume ROIs. Is there any way to
avoid
External Email - Use Caution
Dear /Eugenio,
Here is the log files and all results for one subject as the attachments. I
have run a lots of subjects and all result directories didn't include
l(r)h.hippoSfLabels-T1.v10.mgz file.
Sincerely,
Zheng
At 2019-08-08 09:49:30, "Ig
Dear Zheng,
I believe you ran out of memory. How much RAM does your machine have? You need
about 10GB to run this.
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
From: on behalf of 郑凤莲
Reply-To: Freesurfer supp
10 matches
Mail list logo
