External Email - Use Caution Dear Doug,
Please find the enclosed the output of mris_preproc and .log output of terminal. I viewed the output in freevew as overlay, and again it seems that values getting 0 after mris_preproc. Thanks, Reza ________________________________ From: Greve, Douglas N.,Ph.D. <dgr...@mgh.harvard.edu> Sent: Wednesday, August 7, 2019 6:03:58 PM To: Reza Rahmanzadeh Cc: Freesurfer support list Subject: Re: [Freesurfer] [WARNING: UNSCANNABLE EXTRACTION FAILED]Re: need for help Run mris_preproc with a single subject and send the terminal output On 8/7/19 11:47 AM, Reza Rahmanzadeh wrote: > External Email - Use Caution > > Yes, i checked -projfrac 0.5 with old or new mris_preproc but didn’t work. I > checked all registration, they are perfect. > >> On 7 Aug 2019, at 17:29, Greve, Douglas N.,Ph.D. <dgr...@mgh.harvard.edu> >> wrote: >> >> If you do not specify --projfrac-avg, does it come out as non-zero? If >> so, I would think that it is a problem with the registration. Have you >> checked the registrations? >> >>> On 8/7/19 11:25 AM, Reza Rahmanzadeh wrote: >>> External Email - Use Caution >>> >>> It means that for any given subjects i’ve had one -iv argument and then for >>> mri_glmfit i used .fsgd file with the same order. >>> >>>> On 7 Aug 2019, at 17:23, Reza Rahmanzadeh <reza.rahmanza...@unibas.ch> >>>> wrote: >>>> >>>> External Email - Use Caution >>>> >>>> Yes, for mris_preproc: >>>> >>>> mris_preproc --target fsaverage --hemi lh --projfrac-avg 0 1 0.25 --out >>>> lh.NDI_inflated.avg.mgh --iv <my ndi map_for controls and patients> >>>> <registration.lta for that subjects> >>>> >>>>> On 7 Aug 2019, at 17:14, Reza Rahmanzadeh <reza.rahmanza...@unibas.ch> >>>>> wrote: >>>>> >>>>> mris_preproc --target fsaverage --hemi lh --projfrac-avg 0 1 0.25 --out >>>>> lh.NDI_inflated.avg.mgh >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail.
<<attachment: One_subject_mris_preproc.zip>>
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