[Freesurfer] mrs_glmfit error DOSS

External Email - Use Caution Hello FreeSurfer Developers, I’m attempting to compute mri_glmfit to correlate cortical thickness with my dependent var while controlling for age, gender, iq and MRIcenter (2 centers). I don’t have any interactions or assumptions on group differences s

[Freesurfer] fs on GPU? Segmentation fault error!

External Email - Use Caution Freesurfer Wizards, Any thoughts on this? Thanks in advance ## *I renamed:* /usr/local/cuda-8.0/lib64$ sudo cp libcudart.so.8.0 libcudart.so.5.0 *in the next step:* recon-all -i $sub_dir/$i/"$i".nii -all -sd $output_dir $i -use-gpu . . Testing for CUD

[Freesurfer] mri_label2label: some vertices mapped to nothing in target subject space

External Email - Use Caution Hi Freesurfer Developers, I'm trying to map the vertices of a region (ex. caudal middle frontal) in one subject into the space of another subject (MNI) by using mri_label2label. I am using the freesurfer_dev/bin/mri_label2label.bin from freesurfer-x86

Re: [Freesurfer] fs on GPU? Segmentation fault error!

External Email - Use Caution Hello Vin, The latest/dev branch of freesurfer builds on Ubuntu 16 without cuda, but I have not tried compiling it for cuda on 16.04.  My understanding is that cuda builds are not officially supported.   I would first make sure that everything b

[Freesurfer] Announcing HCP Course 2019, July 8-12 in Portland, OR!

External Email - Use Caution We are pleased to announce the 2019 HCP Course: "Exploring the Human Connectome" , to be

[Freesurfer] applyMorph gives (10000 10000 10000) coordinates

Hey all, I'm trying to morph patients' invasive electrodes into a template brain. I'm not sure why, but sometimes, the applyMorph gives me the (1 1 1) coordinates for a subset of the electrodes, where the rest are ok. In the output, for those electrodes I can see it writes "not valid",