I’ve never tried. Koen/Oula, what do you think?
--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Translational Imaging Group
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/
From: on behalf of Gabor Perlaki
Reply-To: Freesurfer support list
Date: Tuesday, 2
Dear Bruce,
Thank you very much for your kind help!
Best regards
- Mail original -
De: "Bruce Fischl"
À: "Freesurfer support list"
Envoyé: Lundi 22 Janvier 2018 16:12:10
Objet: Re: [Freesurfer] freesurfer segmentation: perirhinal Roi
oh, then I think you are just showing the surface-b
we don't have much experience with it. Can you cc the FS list so that others
can answer? I'll do so on this email. Maybe try some other tool for conversion?
If recon-all fails it is not surprising that mri_convert also fails since they
use the same DICOM code
cheers
Bruce
On Tue, 23 Jan 2
Hello FreeSurfer Developers,
I am extracting ROIs of cross-sectional data using FreeSurfer v6.0. We looked
at this data preliminarily about 2 years ago using FreeSurfer v5.3. It looks
like there are slight differences in the values of the same subject (see
below). Do you know the reason for t
Yes, it solves medial_wall label problem but not mri_aparc2aseg error.log. I
attached you in a previous message:
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg56610.html
Many thanks,
M del Mar
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Freesurfer mailing list
Freesurfer
Try setting the FS_LOAD_DWI env var to 0, eg,
setenv FS_LOAD_DWI 0
or
export FS_LOAD_DWI=0
On 01/23/2018 10:43 AM, Bruce Fischl wrote:
>
>
>
> we don't have much experience with it. Can you cc the FS list so that
> others can answer? I'll do so on this email. Maybe try some other tool
> for
Hi
I have a series of T1 images that I have transformed in Freesurfer to
.nii.gz images in talairach space with mri_convert -at
transforms/talairach.xfm. I am using the skull-stripped image brain.mgz
produced by recon-all.
When I view them in freeview they look well-registered, and similarly
Dear FreeSurfer experts,
I am trying to perform hippocampal subfield segmentation with
FreeSurfer 6. I followed the instructions found on this page:
https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields which
said that I first need to download Matlab Runtime. Which brought me to
this page:
Hi Kaley
no, it is inevitable that there will be differences as we are always
trying to improve the algorithms.
cheers
Bruce
On Tue, 23 Jan 2018, KALEY E ELLIS wrote:
Hello FreeSurfer Developers,
I am extracting ROIs of cross-sectional data using FreeSurfer v6.0. We looked
at this data
I've never used FSLeyes so I can't say
On 01/23/2018 01:05 PM, Helen Beaumont wrote:
> Hi
>
> I have a series of T1 images that I have transformed in Freesurfer to
> .nii.gz images in talairach space with mri_convert -at
> transforms/talairach.xfm. I am using the skull-stripped image brain.mgz
>
Hi Stefano
Lilla is going to be out of touch for a while I expect. Have you
downloaded the FreeSurfer source code? That might be a good place to
start. I think you can also load a .m3z warp into freeview and it will
display it as a 3-frame volume.
I think the representation is that we keep a
Hi there
I uploaded these last week to the file drop and used Bruce's email as it
said it requires a ".nmr.mgh.harvard.edu" email type.
Please let me know if you received icbm-202 and icbm-205 as tar.gz files.
As I mentioned, I was able to get surfaces for both of these but they
seemed to end at
Hi Shadia,
How did you make the externally-derived ribbons? Can you please send us your
recon-all.log and your subject directory so we can take a look?
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
Thanks,
Bram
From: freesurfer-boun...@nmr.mgh.h
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