Is there a chance to get Nvidia GPU support with a current library version (7.5
or 8.0)?
Von: freesurfer-boun...@nmr.mgh.harvard.edu
im Auftrag von Douglas N Greve
Gesendet: Donnerstag, 15. Dezember 2016 17:15
An: freesurfer@nmr.mgh.harvard.edu
Betreff:
Thank you, that worked perfectly!
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you be
I am trying to run recon-all with a T1w image and a FLAIR image to improve the
removal of the dura. I am using the command
recon-all -sd /cenc/mri/freesurfer -subjid 34P1001 -all -i
/cenc/mri/subjects/34P1001/freesurfer/input/t1w.nii.gz -FLAIR
/cenc/mri/subjects/34P1001/freesurfer/input/t2fl
Dear Freesurfer-experts,
I want to create my own ROI for purposes of cortical thickness measurements
in Freesurfer. As input, I have a binary_volume_mask.mgz. But I'm lacking to
get this mask as a label or volume into the FS structure.
I already tryed the mri_vol2surf and mri_vol2roi, unfortunate
Dear all,
I am trying to display a volumetric file to a surface using mri_vol2surf and
then tksurfer.
Here is the error message I get.
I have obtained the email with the few license lines to copy in a file (that i
created) name license.txt
I created a new file and erased the existing LICENSE
Th
Hi Andreas
what to you mean "I already tryed the mri_vol2surf and mri_vol2roi,
unfortunately without successs." In what way didn't they work?
cheers
Bruce
On Fri, 16
Dec 2016, andi...@gmx.net wrote:
Dear Freesurfer-experts,
I want to create my own ROI for purposes of cortical thickness m
Hello everyone!
I have some questions about FS eTICV.
I read on the Wiki that eTICV is not the best measure of ICV and saw the same
from other articles. The alternative I decided on was measuring the TICV using
CAT12 from SPM. I decided to do a scatterplot of the eTICV from FS V6 and TICV
from
Is the file you created located in /Applications/freesurfer?
Also, fir good measure, try creating the same file but naming it
.license in the /Applications/freesurfer
On 12/16/2016 11:20 AM, Marco Ganzetti wrote:
> Dear all,
> I am trying to display a volumetric file to a surface using mri_vol2s
Hello FreeSurfer Developers,
I'm running the recon-all on my subjects data as described in
freesurfer tutorial
(https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial), but it shows
the following error when I run the recon-all command:
ERROR: cannot find CON_101.nii
recon-all -s exited with ERRO
At the current stage I can run recon-all and get the results without problems.
If the license would not work I couldn't be able to run it.
Can someone send me the type of license file I should generate?
In the website it says that I should get a license.txt by email, but I didn't
get any file ju
Try typing the full path to the CON_101.nii file
On 12/16/2016 02:05 PM, Sadhana Singh wrote:
> Hello FreeSurfer Developers,
>
> I'm running the recon-all on my subjects data as described in freesurfer
> tutorial (https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial), but it shows
> the followin
Hi,
I'm trying to open a dicom using the center's instillation of freesurfer
(/usr/local/freesurfer/nmr-stable53-env) but get the following error message
when trying to load the file.
Starting DICOMRead2()
dcmfile =
/autofs/space/jazz_001/users/gwarner/mi2b2Data/1.2.124.113532.132.183.36.32.20
Hi Sadhana
did you not get the responses that Doug and I sent? Ceck to make sure you
are giving the actual full file name, with path and with .gz extension
(if it has that). Or just give it *one* file in the dicom series directly
and don't bother converting to nifti
cheers
Bruce
On Fri, 16 D
if recon-all works then you must have a license file. Are you sure that
FREESURFER_HOME is defined in your environment and points to the right
place? That's where we look for the license file (then in
/Applications/freesurfer on the mac if FREESURFER_HOME isn't defined in
the env0
cheers
Bruc
try running dcmdjpeg on it first. This will create a new set of files that
you probably want to put in another directory to avoid overwriting your raw
data
cheers
Bruce
On Fri, 16 Dec 2016, Warner, Graham Cary wrote:
Hi,
I'm trying to open a dicom using the center's instillation of freesu
Wow, that’s a terrible correlation between two putative measures of head size.
What does the scatterplot of FS’s “eTIV” vs “SupraTentorialVol” look like? The
latter is based on the surfaces, so a scatterplot of the two can be a good way
to identify cases where the talairach.xfm file (from whic
When I run this on the command line it seems to be completing the fslroi
step fine:
"fslroi
/media/Data/Temple/Temple_Tracula/31313422_10128/dmri/dwi_eddy.nii.gz
/media/Data/Temple/Temple_Tracula/31313422_10128/dmri/lowb.nii.gz 0 1
ERROR: Unrecognized format of phase map
/media/Data/Temple/Temple_
It doesn't recognize the format of your field map. It assumes that the field
map has either 2 frames (2 phase maps) or 1 frame (a phase difference map).
From: Katherine Damme [katherine.da...@gmail.com]
Sent: Friday, December 16, 2016 5:18 PM
To: Freesurfer suppor
Hello FreeSurfer Developers,
I'm running the recon-all on my subjects data as described in
freesurfer tutorial
(https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial), but it shows
the following error when I run the recon-all command:
ERROR: cannot find CON_101.nii
recon-all -s exited with ERRO
Hi Sadhana, this has been answered several times. Are you not getting
the replies from the list?
On 12/16/16 6:13 PM, Sadhana Singh wrote:
Hello FreeSurfer Developers,
I'm running the recon-all on my subjects data as described in freesurfer tutorial (https://surfer.nmr.mgh.harvard.edu/fswiki/
Please post this ad:
Human Magnetic Resonance Center Director
(Tenured Associate or Full Professor)
The Department of Psychological and Brain Sciences and Institute for Applied
Life Sciences at the University of Massachusetts Amherst, invite applications
for a tenured faculty position at the r
Dear freesurfer experts,
I managed to create dlPFC ROI and successfully extracted the cortical
surface parameters. I also want to have the whole volume of dlPFC (*not*
the gray matter volume). Will it make any sense if I multiply dlPFC ROI
surface area with its corresponding thickness to get a val
22 matches
Mail list logo
