Hi Sadhana
did you not get the responses that Doug and I sent? Ceck to make sure you
are giving the actual full file name, with path and with .gz extension
(if it has that). Or just give it *one* file in the dicom series directly
and don't bother converting to nifti
cheers
Bruce
On Fri, 16 Dec 2016, Sadhana Singh
wrote:
Hello FreeSurfer Developers,
I'm running the recon-all on my subjects data as described in freesurfer tut
orial (https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial), but it shows t
he following error when I run the recon-all command:
ERROR: cannot find CON_101.nii
recon-all -s exited with ERRORS
I've tried so many times but still shows same errors. Does anyone have any t
houghts on how to trouble-shoot this one? Also, Ive attached the recon-all.l
og in case it's of any use.
1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
2) Platform: Red Hat Enterprise Linux 7
3) uname -a: Linux lcmodel 3.10.0-327.el7.x86_64 #1 SMP Thu Oct 29 17:29:29
EDT 2015 x86_64 x86_64 x86_64 GNU/Linux
4) recon-all.log: see attached
RegardsSadhana Singh, PhD Postdoctoral Researcher
Departments of Anesthesiology
David Geffen School of Medicine at UCLA
University of California at Los Angeles
Los Angeles, CA, USA
Phone No: 424-270-4940
Email: sadhanasi...@mednet.ucla.edu
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