Hi,
not 100% sure what you want but perhaps this:
http://brainder.org/2011/07/05/freesurfer-brains-in-arbitrary-colours
is what you're looking for?
-joost
On Tue, Aug 14, 2012 at 11:13 PM, Douglas N Greve wrote:
> Try touching ?h.orig.nofix, ie,
> touch rh.orig.nofix lh.orig.nofix
>
> th
Hi All,
When I ran recon-all -autorecon1 in one of my subject I encountered the
following error
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm
***FAILED*** (p=0., pval=0. < threshold=0.0050)
Manual Talairach alignment may be necessary, or
include the -notal-check
Hello,
Is there a way to export cortical thickness values for each vertex across the
entire cortex? Can this be done using Qdec to generate a larger stats table
for a group of participants?
Thank you,
Molly
Molly DuBray Prigge, PhD
Research Associate
Department of Psychiatry
University o
Hello,
I have two questions:
First:
I made left hemisphere anatomical ROIs using the freesurfer cortical
parcellation atlas and fsaverage's data. However, when I convert these ROIs
from .mgz to an SPM-compatible format (.img), the LH ROIs show up on the
right. Any idea on how to resolve this prob
Hi Eduardo,
On 08/15/2012 04:24 PM, Eduardo Europa wrote:
> Hello,
>
> I have two questions:
>
> First:
> I made left hemisphere anatomical ROIs using the freesurfer cortical
> parcellation atlas and fsaverage's data. However, when I convert these
> ROIs from .mgz to an SPM-compatible format (.i
Hi Molly, I don't understand what you are asking. Can you elaborate?
doug
On 08/15/2012 04:10 PM, Molly DuBray wrote:
> Hello,
>
> Is there a way to export cortical thickness values for each vertex
> across the entire cortex? Can this be done using Qdec to generate a
> larger stats table for a
Hi all,
I'm running freesurfer ver 5.1 and I'm receiving an error with the command
recon-all -s (subjid) -hippo-subfields. The log file terminates with the
following information:
Hippocampal Subfields processing Wed Aug 15 13:59:42 EDT 2012
mkdir -p /autofs/space/shimshon_002/users/eiran/subject
Hi Molly, you can use the y.mgh file that is created by qdec. This is a
stack of all of your subjects in the standard surface space. You can
convert to nifti if that is more convenient. BTW, the stats table just
gives you the stats for each ROI. If this is something you want, then
use aparcstat
