Hi, not 100% sure what you want but perhaps this:
http://brainder.org/2011/07/05/freesurfer-brains-in-arbitrary-colours is what you're looking for? -joost On Tue, Aug 14, 2012 at 11:13 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu > wrote: > Try touching ?h.orig.nofix, ie, > touch rh.orig.nofix lh.orig.nofix > > then re-running with -make all > > doug > > On 08/14/2012 05:08 PM, David Vazquez wrote: > > > > Hi, > > > > We would like to visually display some t-values onto a brain using the > > 2009 Destrieux freesurfer parcellations. We have our own t-values for > > each parcellation. We would like to display a color-coded spm map for > > all parcellations, and would like each parcellation to represent the > > same intensity, instead of voxel by voxel, as was done by Watkins et > > al. (2001). > > > > Has anyone done this? Or have a clue where to find the relevant options? > > > > Thank you, > > > > David Vazquez > > > > > > Watkins, K.E., Paus, T., Lerch, J.P., Zijdenbos, A., Collins, D.L., > > Neelin, P., Taylor, J., Worsley., K.J., and Evans, A.C. (2001). > > Stuctural Asymmetries in the human brain: A voxel-pased Statistical > > Analysis of 142 MRI scans. /Cerebral Cortex, 11/(9), 868-877. > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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