[Freesurfer] anatomical stats

2005-09-16 Thread Fornito, Alexander
Hi, I'm using the 20050905 distribution and it seems like mris_anatomical_stats is trying to look for cor files, when I've run my analyses using mgz. Is there a way to change this, or have I got it wrong?. Here is the output mris_anatomical_stats 101 lh white reading volume /data/flanders/wo

Re: [Freesurfer] anatomical stats

2005-09-16 Thread Bruce Fischl
try mris_anatomical_stats -mgz On Fri, 16 Sep 2005, Fornito, Alexander wrote: Hi, I'm using the 20050905 distribution and it seems like mris_anatomical_stats is trying to look for cor files, when I've run my analyses using mgz. Is there a way to change this, or have I got it wrong?. Here is

Re: [Freesurfer] anatomical stats

2005-09-16 Thread Bruce Fischl
p.s. the flags should always come before the mandatory command line args. On Fri, 16 Sep 2005, Fornito, Alexander wrote: Hi, I'm using the 20050905 distribution and it seems like mris_anatomical_stats is trying to look for cor files, when I've run my analyses using mgz. Is there a way to ch

[Freesurfer] new stable release

2005-09-16 Thread Sasha Wolosin
Dear all, I am having trouble installing/setting up the stable release v2.1 for CentOS 4 x86_64. I seem to be missing all the mni and fsl tools, they are not included in my freesurfer home folder. Should I just copy these from the dev version? When I try to run setup I get this error: [EMAI

Re: [Freesurfer] new stable release

2005-09-16 Thread Nick Schmansky
Sasha, A new stable release has not been released yet. The existing stable release remains posted on the distribution site, and it appears that is what was downloaded. It does not include the mni or fsl tools, nor the new subcortical segmentation functionality (which the current 'dev' release,

RE: [Freesurfer] anatomical stats

2005-09-16 Thread Fornito, Alexander
I can create a log file, but in the output, the numbers are out of alignment, so you can't easily figure out what each number refers to. Is there some preferable output format or suffix that I can add to the log file name to adjust this? Also, I can't seem to use the -f flag to create a table