Sasha, A new stable release has not been released yet.
The existing stable release remains posted on the distribution site, and it appears that is what was downloaded. It does not include the mni or fsl tools, nor the new subcortical segmentation functionality (which the current 'dev' release, and the upcoming 'stable' release, will include). If you really want to make the older 'stable' version work, you could manually download the mni tools, or copy from the 'dev' version if you prefer. The fsl tools are distributed from the FSL site: http://www.fmrib.ox.ac.uk/fsl Nick On Fri, 2005-09-16 at 16:37 -0400, Sasha Wolosin wrote: > Dear all, > I am having trouble installing/setting up the stable release v2.1 for > CentOS 4 x86_64. > I seem to be missing all the mni and fsl tools, they are not included in my > freesurfer home folder. Should I just copy these from the dev version? > > When I try to run setup I get this error: > > [EMAIL PROTECTED] /freesurfer]$ source SetUpFreeSurfer.csh > Setting up enviroment for FreeSurfer/FS-FAST > $Id: FreeSurferEnv.csh,v 1.3.6.6 2005/07/29 17:40:57 kteich Exp $ > FREESURFER_HOME /freesurfer > FSFAST_HOME /freesurfer/fsfast > FSL_DIR /freesurfer/fsl > SUBJECTS_DIR /freesurfer/subjects > WARNING: /freesurfer/fsl/bin does not exist. > > Any help is greatly appreciated. > Thanks, > Sasha > > Sasha Wolosin > Research Assistant > Developmental Cognitive Neurology > Kennedy Krieger Institute > 707 N. Broadway > Baltimore, MD 21205 > ph: (443) 923-9270 > [EMAIL PROTECTED] > > > > Disclaimer: > The materials in this e-mail are private and may contain Protected Health > Information. Please note that e-mail is not necessarily confidential or > secure. Your use of e-mail constitutes your acknowledgment of these > confidentiality and security limitations. If you are not the intended > recipient, be advised that any unauthorized use, disclosure, copying, > distribution, or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this e-mail in > error, please immediately notify the sender via telephone or return e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
