Re: [Freesurfer] recon-all 5.2 not generating surfaces

2013-01-14 Thread Bruce Fischl
It looks like it just started running too On Jan 14, 2013, at 6:05 PM, Nick Schmansky wrote: > Jon, > > the log indicates that mri_em_register was running. does 'top' show if > mri_em_register is running? it can take quite a while (upwards of 40 > minutes), and the log can sit unchanged for

Re: [Freesurfer] recon-all 5.2 not generating surfaces

2013-01-14 Thread Nick Schmansky
Jon, the log indicates that mri_em_register was running. does 'top' show if mri_em_register is running? it can take quite a while (upwards of 40 minutes), and the log can sit unchanged for several minutes during the section shown in your log. Nick On Mon, 2013-01-14 at 15:25 -0500, Jonathan H