Jon, the log indicates that mri_em_register was running. does 'top' show if mri_em_register is running? it can take quite a while (upwards of 40 minutes), and the log can sit unchanged for several minutes during the section shown in your log.
Nick On Mon, 2013-01-14 at 15:25 -0500, Jonathan Holt wrote: > In 5.0.0 I was used to dealing with brainmask.mgz files. in 5.2.0, I have so > far been able to generate a T1.mgz, which to my eyes, looks OK. However, the > resulting surf folder is empty and I'm not sure why. Log file attached. > > > jon > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
