Re: [Freesurfer] Qdec Generate Stats Data Table Error

2016-08-10 Thread Douglas N Greve
did you look at the file it points to as the source of the error? /local/limachiagv/freesurfer/subjects/CON_201/stats/aseg.stats On 07/27/2016 05:00 PM, Limachia, Gaurang (NIH/NINDS) [F] wrote: > Hello All, > > My table.dat file loaded fine. However, I came across the following > error when I wa

Re: [Freesurfer] qdec - Generate stats data table

2015-08-04 Thread pablo najt
thanks! > Date: Tue, 4 Aug 2015 15:01:43 -0400 > From: gr...@nmr.mgh.harvard.edu > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] qdec - Generate stats data table > > You can just run recon-all with the -wmparc flag. It should be pretty > quick, less than

Re: [Freesurfer] qdec - Generate stats data table

2015-08-04 Thread Douglas N Greve
rom start or is there a shortcut for getting this file? > Thanks Doug. > Pablo > > > Date: Tue, 4 Aug 2015 11:42:43 -0400 > > From: gr...@nmr.mgh.harvard.edu > > To: freesurfer@nmr.mgh.harvard.edu > > Subject: Re: [Freesurfer] qdec - Generate stats data table > >

Re: [Freesurfer] qdec - Generate stats data table

2015-08-04 Thread pablo najt
u > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] qdec - Generate stats data table > > Have you looked in /Volumes/NEW_VOLUME/GBS/117AS/stats/wmparc.stats to > see if there might be a problem? > > On 08/04/2015 05:43 AM, pablo najt wrote: > > Dear FS experts, >

Re: [Freesurfer] qdec - Generate stats data table

2015-08-04 Thread Douglas N Greve
Have you looked in /Volumes/NEW_VOLUME/GBS/117AS/stats/wmparc.stats to see if there might be a problem? On 08/04/2015 05:43 AM, pablo najt wrote: > Dear FS experts, > I am trying to generate my stats data tables with QDEC -after > successfully loading my data table- and come across the following

Re: [Freesurfer] QDEC - generate stats data table error: cannot find /usr/local

2011-08-16 Thread Jamaan Alghamdi
Hi Rajeev, Usually, this type of error is produced if stats file is missed, check if aseg. stats file is there in directory "/usr/local/freesurfer/subjects/140/stats" directory. If this file is missed in some subjects, you can add "--skip" to command line like; asegstats2table --subjects 01 0