did you look at the file it points to as the source of the error? /local/limachiagv/freesurfer/subjects/CON_201/stats/aseg.stats
On 07/27/2016 05:00 PM, Limachia, Gaurang (NIH/NINDS) [F] wrote: > Hello All, > > My table.dat file loaded fine. However, I came across the following > error when I was running the Qdec generate stats data table. If you > can let me know what I can do to fix the following error I would > greatly appreciate it. > > Uncaught exception: command failed: asegstats2table --common-segs > --meas volume --tablefile > /local/limachiagv/freesurfer/subjects/qdec/stats_tables/aseg.volume.stats.dat > --statsfile=aseg.stats --subjects CON_201 CON_202 CON_203 CON_204 > CON_205 CON_206 CON_207 CON_209 CON_211 CON_212 CON_213 CON_214 > CON_215 CON_216 CON_217 CON_218 CON_219 CON_220 CON_221 CON_222 > CON_223 CON_225 CON_226 CON_227 CON_228 CON_230 CON_231 CON_232 > CON_233 CON_234 CON_235 CON_236 CON_237 CON_239 CON_240 CON_241 > CON_242 CON_244 CON_245 CON_246 CON_247 CON_248 CON_249 CON_250 > CON_251 CON_252 CON_253 CON_254 CON_255 CON_256 CON_257 CON_258 > CON_259 CON_260 PAT_402 PAT_403 PAT_407 PAT_409 PAT_410 PAT_411 > PAT_412 PAT_413 PAT_414 PAT_415 PAT_416 PAT_417 PAT_418 PAT_419 > PAT_421 PAT_422 PAT_424 PAT_425 PAT_426 PAT_427 PAT_428 PAT_429 > PAT_430 PAT_431 PAT_432 PAT_433 PAT_437 PAT_439 PAT_440 > > SUBJECTS_DIR : /local/limachiagv/freesurfer/subjects > > Parsing the .stats files > > ERROR: The stats file > /local/limachiagv/freesurfer/subjects/CON_201/stats/aseg.stats is not > found or is too small to be a valid statsfile > > Use --skip flag to automatically skip bad stats files > > > Thanks, > > Gaurang > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
