Fischl
Subject: Re: [Freesurfer] mritotal failed - help with manual
registration (Bruce Fischl)
To: Freesurfer support list
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Hi Will
There was no attachment
Bruce
> On Feb 2, 201
p: hide very little cluster (std...@virgilio.it)
> 20. Re: R: R: Re: FDR map: hide very little cluster (Douglas N Greve)
> 21. R: Re: R: Re: FDR map: hide very little cluster
> (std...@virgilio.it)
>
> --
>
> Message: 1
> Date: Sun, 24 Jan 2016 18:58:
map: hide very little cluster
(std...@virgilio.it)
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Message: 1
Date: Sun, 24 Jan 2016 18:58:54 -0500 (EST)
From: Bruce Fischl
Subject: Re: [Freesurfer] mritotal failed - help with manual
registration
To: Frees
(std...@virgilio.it)
--
Message: 1
Date: Sun, 24 Jan 2016 18:58:54 -0500 (EST)
From: Bruce Fischl
Subject: Re: [Freesurfer] mritotal failed - help with manual
registration
To: Freesurfer support list
Message-ID:
Hi Will
can you take the same images with freeview and send them along? Also:
tell us a bit about your images. What format did they start in? Were they
dicoms?
Bruce
On Mon, 25 Jan 2016, will brown wrote:
> Hi all,
> After attempting recon-all I received the error "mritotal failed, see
> tran
received this e-mail in error)
> please
> >notify
> >
> >the sender immediately and destroy this e-mail. Any
> >
> >unauthorised copying, disclosure or distribution
> of the
>
genhaenggi.ch (private website)
> >
> >
> >This e-mail (and any attachment/s) contains confidential
> >
> >and/or privileged information. If you are not the intended
> >
> >recipient (or have received this e-mail in error) please
> &
ure or distribution of the
>
>material in this e-mail is strictly forbidden.
>
>
> ---------------
>
>
>
>
>Von: <mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
>>
>> This e-mail (and any attachment/s) contains confidential
>>
>> and/or privileged information. If you are not the intended
>>
>> recipient (or have received this e-mail in error) please
>> notify
>>
>> the sende
fer Mailinglist
Betreff: Re: [Freesurfer] MRITOTAL
Dear Jürgen,
Thanks for your reply. Could you please guide me on how to
downgrade
it? I need to try everything with these 8 subjects to
finish the whole
cohort of subjects.
Your help is so appreciated
this e-mail. Any
>>
>> unauthorised copying, disclosure or distribution of the
>>
>> material in this e-mail is strictly forbidden.
>>
>>
>> ---
>>
>>
>>
>>
56
An: Freesurfer Mailinglist
Betreff: Re: [Freesurfer] MRITOTAL
Dear Jürgen,
Thanks for your reply. Could you please guide me on how to downgrade
it? I need to try everything with these 8 subjects to finish the whole
cohort of subjects.
Your help is so appreciated.
Thanks,
Ali
On Sat, Aug 29,
-mail is strictly forbidden.
---
Von: on behalf of Ali Radaideh
Antworten an: Freesurfer Mailinglist
Datum: Samstag, 29. August 2015 15:56
An: Freesurfer Mailinglist
Betreff: Re: [Freesurfer] MRITOTAL
> D
an: Freesurfer Mailinglist
Datum: Samstag, 29. August 2015 15:56
An: Freesurfer Mailinglist
Betreff: Re: [Freesurfer] MRITOTAL
> Dear Jürgen,
>
> Thanks for your reply. Could you please guide me on how to downgrade it? I
> need to try everything with these 8 subjects to fini
Dear Jürgen,
Thanks for your reply. Could you please guide me on how to downgrade it? I
need to try everything with these 8 subjects to finish the whole cohort of
subjects.
Your help is so appreciated.
Thanks,
Ali
On Sat, Aug 29, 2015 at 4:16 PM, Jürgen Hänggi wrote:
> Dear Ali
>
>
> if Talai
Dear Ali
if Talairach alignment is not of good quality, then mritotal is used and the
shellwords.pl problem is related to the fact that you have a newer version
of perl that no longer contain shellwords.pl.
you can downgrade perl to 5.12 or so, which however, is not a good idea.
I have no oth
es for my aim and If I use, how can I
calculate PBVC values for each subject(person).Thanks
Date: Mon, 24 Aug 2015 15:41:57 +0300
From: ali.radai...@hu.edu.jo
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] mritotal
Hi Pınar,
Open a terminal
change directory to where you have sav
Hi Pınar,
Open a terminal
change directory to where you have saved you T1 image
type setenv SUBJECTS_DIR ${PWD}
then start you processing as follows:
Step One:
recon-all -i (name of T1 image with its extension) -s (name of the subject)
example
recon-all -i MPRAGE.img -s Ali
Step two:
recon-a
Hi Ali,
I am also have same subject with you I am a question for you, How van I get
recon-all for subject, please help me
Thanks a lot
Pınar Karadayı
iPhone'umdan gönderildi
23 Ağu 2015 tarihinde 19:42 saatinde, Ali Radaideh
şunları yazdı:
> Dear Freesurfer Experts,
>
> I have finished the r
you need to install the MNI software.
cheers,
Bruce
On Mon, 16 Aug 2004, Eswar Damaraju
wrote:
Hi,
I'm experiencing the following problem when I try to talairach a subjects
anatomical data. I get the same message below when I run both
$ talairach sid (or) $ recon-all -stage1 -sid sid
-
I put
setenv LANG en_US
into FreeSurferEnv.csh, thanks to a tip from Marty Sereno. Marty said that
perl regular expressions were failing to handle the unicode character set.
Best, Darren
- Original Message -
From: "Patrice Seyed" <[EMAIL PROTECTED]>
To: <[EMAIL PROTECTED]>
Cc: "'Patri
Add the following line to your SetUpFreeSurfer.csh in your home dir:
setenv LANG C
Don't change it in recon-all. It needs to be in the environment of your
shell.
hth,
-a
On Mon, 21 Jun 2004, Patrice Seyed wrote:
> Hi,
>
> I am experiencing the following error when running recon-all rel
Hi Patrice,
I think you need to setenv the LANG variable. Check the MNI web site,
this is a known bug of theirs.
Bruce
On Mon, 21 Jun 2004, Patrice Seyed wrote:
> Hi,
>
> I am experiencing the following error when running recon-all relating the
> mritotal:
>
> mritotal -verbose -debug -clobbe
freesurfer assumes you are running cshell or tcsh shell.
% setenv LANG C
Tosa
Patrice Seyed wrote:
Hi,
I am experiencing the following error when running recon-all relating the
mritotal:
mritotal -verbose -debug -clobber -protocol icbm orig/orig.mnc
transforms/talair ach.xfm Out of memory!
ERROR: m
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