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From: "Hoopes, Andrew"
Date: Tuesday, 8 May 2018 at 16:27
To: "Iglesias Gonzalez, Eugenio" , Freesurfer support
list
Subject: Re: [Freesurfer] Longitudinal hippocampal subfields analysis problem
I’m not sure. How long do these runs usually take Eugenio? I’m noticing th
ect: Re: [Freesurfer] Longitudinal hippocampal subfields analysis problem
External Email - Use Caution
Is it possible that it ran out of memory? Andrew, what do you think?
--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Translational Imaging Group
University College London
http://www
External Email - Use Caution
Is it possible that it ran out of memory? Andrew, what do you think?
--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Translational Imaging Group
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/
From: on behalf of
Hi Manuel,
smoothing is usually only necessary for surface data.
You should have crated the subfields on top of the longitudinal directories, so:
> recon-all -long -hippocampal-subfields-T1
>
Else they will only be available in the cross dirs. The longs will have better
reliability.
Best
Hi Sal,
asegstats2table (and aparc..) will take the longitudinal qdec file and
then automatically select the *.long.* directories to create the table.
So there is no need to move them to a separate folder.
The longitudinal qdec file is simply a table with at least 2 columns
(for stacking res
Thank you Martin.
I will try this approach. I was able to temporarily move the longitudinal
subject data to its own folder to run aparc2table and aseg2table. Hopefully
this will also work for the hippocampal subfield script.
Best wishes,
Sal
Salil Soman, MD, MS
Postdoctoral Research Fellow - S
Hi Salil,
just run the hippo-subfields on the longitudinal results like this:
recon-all -long -hippo-subfields
to generate the subfield data. I am not familiar with the kvlQuantify...
script and think it works on all subjects in the Subjects dir. Not sure
what the best way is to solve this
