Thank you Martin. I will try this approach. I was able to temporarily move the longitudinal subject data to its own folder to run aparc2table and aseg2table. Hopefully this will also work for the hippocampal subfield script.
Best wishes, Sal Salil Soman, MD, MS Postdoctoral Research Fellow - Stanford Radiological Sciences Laboratory Fellow - Palo Alto War Related Illness and Injury Study Center WOC Neuroradiology Attending - Veterans Affairs Palo Alto Health Care System On Jan 7, 2014 8:07 AM, "Martin Reuter" <mreu...@nmr.mgh.harvard.edu> wrote: > Hi Salil, > > just run the hippo-subfields on the longitudinal results like this: > > recon-all -long <tpNi> <templateid> -hippo-subfields > > to generate the subfield data. I am not familiar with the kvlQuantify... > script and think it works on all subjects in the Subjects dir. Not sure > what the best way is to solve this as your subject dir contains also the > cross and base results. Probably you can run the script and it will simply > skip the cross and base directories (as no -hippo-subfields was run on > them). > > > Best, Martin > > > On 01/05/2014 01:40 AM, Salil Soman wrote: > > Hi, > > I have been able to do the longitudinal processing steps for a number of > subjects with 3 time points each, and then extract the generated statistics > using aparcstats2table and asegstats2table. Is it possible to perform > longitudinal analysis of the hippocampal subfields? If so, could someone > point me to how to perform this analysis, > as kvlQuantifyHippocampalSubfieldSegmentations.sh does not work on the > output files I've generated. > > Thank you. > > Salil Soman, MD, MS > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- > Martin Reuter, Ph.D. > Assistant in Neuroscience - Massachusetts General Hospital > Instructor in Neurology - Harvard Medical School > MGH / HMS / MIT > > A.A.Martinos Center for Biomedical Imaging > 149 Thirteenth Street, Suite 2301 > Charlestown, MA 02129 > > Phone: +1-617-724-5652 > Email: > mreu...@nmr.mgh.harvard.edu > reu...@mit.edu > Web : http://reuter.mit.edu > > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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