Hi Salil,
just run the hippo-subfields on the longitudinal results like this:
recon-all -long <tpNi> <templateid> -hippo-subfields
to generate the subfield data. I am not familiar with the kvlQuantify...
script and think it works on all subjects in the Subjects dir. Not sure
what the best way is to solve this as your subject dir contains also the
cross and base results. Probably you can run the script and it will
simply skip the cross and base directories (as no -hippo-subfields was
run on them).
Best, Martin
On 01/05/2014 01:40 AM, Salil Soman wrote:
Hi,
I have been able to do the longitudinal processing steps for a number
of subjects with 3 time points each, and then extract the generated
statistics using aparcstats2table and asegstats2table. Is it possible
to perform longitudinal analysis of the hippocampal subfields? If so,
could someone point me to how to perform this analysis,
as kvlQuantifyHippocampalSubfieldSegmentations.sh does not work on the
output files I've generated.
Thank you.
Salil Soman, MD, MS
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Martin Reuter, Ph.D.
Assistant in Neuroscience - Massachusetts General Hospital
Instructor in Neurology - Harvard Medical School
MGH / HMS / MIT
A.A.Martinos Center for Biomedical Imaging
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Phone: +1-617-724-5652
Email:
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reu...@mit.edu
Web : http://reuter.mit.edu
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