Re: [Freesurfer] Installation error

2014-02-05 Thread Bruce Fischl
glad to hear it worked out Bruce On Wed, 5 Feb 2014, Saurabh Thakur wrote: Hi Sebastian ,Bruce and Markus. I got the freesurfer running using freesurfer-x86_64-unknown-linux-gnu-stable5-20130513 Thanks for all your help. cheers Saurabh Thakur, On Tue, Feb 4, 2014 at 9:18 PM, Sebastian

Re: [Freesurfer] Installation error

2014-02-05 Thread Saurabh Thakur
Hi Sebastian ,Bruce and Markus. I got the freesurfer running using freesurfer-x86_64-unknown-linux-gnu-stable5-20130513 Thanks for all your help. cheers Saurabh Thakur, On Tue, Feb 4, 2014 at 9:18 PM, Sebastian Moeller < sebastian.moell...@rwth-aachen.de> wrote: > Hi Saurabh, > > > On Fe

Re: [Freesurfer] Installation error

2014-02-04 Thread Sebastian Moeller
Hi Saurabh, On Feb 4, 2014, at 16:18 , Saurabh Thakur wrote: > Hi Sebastian, > > I have copied in same tktools and tried to run the tkmedit2 subject1 > rawavg.mgz > > got the output: > > saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer/tktools$ tkmedit2 > subject1 rawavg.mgz > b

Re: [Freesurfer] Installation error

2014-02-04 Thread Saurabh Thakur
Hi Sebastian, I have copied in same tktools and tried to run the *tkmedit2 subject1 rawavg.mgz* got the output: saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer/tktools$ *tkmedit2 subject1 rawavg.mgz* bash: /usr/local/freesurfer/tktools/tkmedit2: Permission denied saurabh@saurabh-Dell

Re: [Freesurfer] Installation error

2014-02-04 Thread Sebastian Moeller
Hi, On Feb 4, 2014, at 15:38 , Saurabh Thakur wrote: > > On Tue, Feb 4, 2014 at 7:41 PM, Sebastian Moeller > wrote: > tkmedit subject1 rawavg.mgz > > Hi Sebastian, > > tkmedit is properly get attached. > tat means tcsh is working properly. > //==

Re: [Freesurfer] Installation error

2014-02-04 Thread Saurabh Thakur
On Tue, Feb 4, 2014 at 7:41 PM, Sebastian Moeller < sebastian.moell...@rwth-aachen.de> wrote: > tkmedit subject1 rawavg.mgz Hi Sebastian, tkmedit is properly get attached. tat means tcsh is working properly. //==// saurabh@saurabh-Dell-Sys

Re: [Freesurfer] Installation error

2014-02-04 Thread Sebastian Moeller
Hi again, On Feb 4, 2014, at 14:57 , Saurabh Thakur wrote: > > On Tue, Feb 4, 2014 at 7:15 PM, Sebastian Moeller > wrote: > tkmedit -f rawavg.mgz > > > Hi Sebastian, > > //// > saurabh@saurabh-Dell-System-XPS-L502X:~$ which tk

Re: [Freesurfer] Installation error

2014-02-04 Thread Saurabh Thakur
On Tue, Feb 4, 2014 at 7:15 PM, Sebastian Moeller < sebastian.moell...@rwth-aachen.de> wrote: > tkmedit -f rawavg.mgz Hi Sebastian, //// saurabh@saurabh-Dell-System-XPS-L502X:~$ which tkmedit /usr/local/freesurfer/bin/tkmedit saur

Re: [Freesurfer] Installation error

2014-02-04 Thread Sebastian Moeller
Hi, what happens if you open a terminal and type (without the double quotes): "which tkmedit" "which tkmedit.bin" If your path is set correctly there will something along the lines of (example from my mac): hms-beagle:netperf-wrapper moeller$ which tkmedit /opt/freesurfer-Darwin-lion-stable-pub-

Re: [Freesurfer] Installation error

2014-02-04 Thread Saurabh Thakur
Hi, I have got all the files necessary. as per your instructions. as well as environment is also set. //===// freesurfer-Linux-centos4-stable-pub-v5.2.0 Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_

Re: [Freesurfer] Installation error

2014-02-04 Thread Bruce Fischl
I think your hardware is fine, but your software environment needs fixing (see my previous email) cheers Bruce On Tue, 4 Feb 2014, Saurabh Thakur wrote: Hi, I am using laptop with 8Gb RAM, i7 Core processor, and enough HDD still i m getting same erro ( /usr/local/freesurfer/tktools/tkmed

Re: [Freesurfer] Installation error

2014-02-04 Thread Saurabh Thakur
Hi, I am using laptop with 8Gb RAM, i7 Core processor, and enough HDD still i m getting same erro ( */usr/local/freesurfer/tktools/tkmedit.bin: Command not found*. ) because i m working on laptop...? or "recon-all --help " is working but *tkmedit is not working* Hope to get response asap.