Hi,
On Feb 4, 2014, at 15:38 , Saurabh Thakur <srbht...@gmail.com> wrote:
>
> On Tue, Feb 4, 2014 at 7:41 PM, Sebastian Moeller
> <sebastian.moell...@rwth-aachen.de> wrote:
> tkmedit subject1 rawavg.mgz
>
> Hi Sebastian,
>
> tkmedit is properly get attached.
> tat means tcsh is working properly.
> //==========================================================//
> saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$ cd $SUBJECTS_DIR
> saurabh@saurabh-Dell-System-XPS-L502X:~/Desktop/saurabh_freesurfer$
>
> saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$ cat `which
> tkmedit`
> #!/bin/tcsh -ef
> source $FREESURFER_HOME/bin/tcl_setup
> exec $FREESURFER_HOME/tktools/tkmedit.bin $argv
> saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$
>
>
> saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$ tkmedit subject1
> rawavg.mgz
> /usr/local/freesurfer/tktools/tkmedit.bin: Command not found.
> saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$
> //===============================================================//
>
>
> Still error is present…?
Looks like it, so let me propose:
I could imagine that somehow the invoked tcsh instance does not have the
correct path available. To test this hypothesis could you save the following to
your home directory as tkmedit2
So in other words, open your preferred editor (edit?) create a new file
with the name tkmedit2 in your home directory, and copy and paste the following
into it and save it again:
#!/bin/tcsh -Fe
source $FREESURFER_HOME/bin/tcl_setup
echo ${PATH}
exec $FREESURFER_HOME/tktools/tkmedit.bin $argv
exit 0
#last line…
and test:
tkmedit2 subject1 rawavg.mgz
(and post the output) in my last mail there was a typo here, the goal is to
call the just created tkmedit2 and see whether the $PATCH contains the tktools
directory.
best regards
Sebastian
>
>
> cheers
> Saurabh Thakur,
>
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine
> at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
