On Tue, Feb 4, 2014 at 7:15 PM, Sebastian Moeller < sebastian.moell...@rwth-aachen.de> wrote:
> tkmedit -f rawavg.mgz Hi Sebastian, //================================================================// saurabh@saurabh-Dell-System-XPS-L502X:~$ which tkmedit /usr/local/freesurfer/bin/tkmedit saurabh@saurabh-Dell-System-XPS-L502X:~$ which tkmedit.bin /usr/local/freesurfer/tktools/tkmedit.bin saurabh@saurabh-Dell-System-XPS-L502X:~$ echo $PATH /usr/local/freesurfer/bin:/usr/local/freesurfer/fsfast/bin: /usr/local/freesurfer/tktools :/usr/local/freesurfer/mni/bin:/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games saurabh@saurabh-Dell-System-XPS-L502X:~$ saurabh@saurabh-Dell-System-XPS-L502X:~$ cd $FREESURFER_HOME saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$ cd subject1/mri bash: cd: subject1/mri: No such file or directory saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$ ls -all total 392 drwxr-xr-x 16 root root 4096 Feb 4 16:17 . drwxr-xr-x 12 root root 4096 Feb 4 15:48 .. -rw-r--r-- 1 root root 3302 Mar 1 2013 ASegStatsLUT.txt -rw-r--r-- 1 root root 728 Mar 1 2013 AUTHORS drwxr-xr-x 7 root root 4096 Mar 1 2013 average drwxr-xr-x 2 root root 36864 Mar 1 2013 bin -rw-r--r-- 1 root root 43 Mar 1 2013 build-stamp.txt drwxr-xr-x 3 root root 4096 Mar 1 2013 data -rw-r--r-- 1 root root 47514 Mar 1 2013 DefectLUT.txt drwxr-xr-x 3 root root 4096 Mar 1 2013 diffusion drwxr-xr-x 3 root root 4096 Mar 1 2013 docs -rw-r--r-- 1 root root 84833 Mar 1 2013 FreeSurferColorLUT.txt -rwxr-xr-x 1 root root 16760 Mar 1 2013 FreeSurferEnv.csh -rwxr-xr-x 1 root root 16846 Mar 1 2013 FreeSurferEnv.sh drwxr-xr-x 2 root root 4096 Mar 1 2013 fsafd drwxr-xr-x 5 root root 4096 Mar 1 2013 fsfast drwxr-xr-x 12 root root 4096 Mar 1 2013 lib -rw-r--r-- 1 root root 40 Feb 4 16:17 .license -rw-r--r-- 1 root root 39 Feb 4 15:51 .license~ -rw-r--r-- 1 root root 10297 Mar 1 2013 LICENSE drwxr-xr-x 3 root root 4096 Mar 1 2013 matlab drwxr-xr-x 8 root root 4096 Feb 21 2010 mni -rw-r--r-- 1 root root 4793 Mar 1 2013 NOTICE -rw-r--r-- 1 root root 635 Mar 1 2013 README -rw-r--r-- 1 root root 28445 Mar 1 2013 SegmentNoLUT.txt drwxr-xr-x 2 root root 4096 Mar 1 2013 sessions -rwxr-xr-x 1 root root 1303 Mar 1 2013 SetUpFreeSurfer.csh -rwxr-xr-x 1 root root 1293 Mar 1 2013 SetUpFreeSurfer.sh -rw-r--r-- 1 root root 4104 Mar 1 2013 Simple_surface_labels2009.txt drwxr-xr-x 14 root root 4096 Mar 1 2013 subjects -rw-r--r-- 1 root root 1681 Mar 1 2013 tkmeditParcColorsCMA drwxr-xr-x 2 root root 4096 Mar 1 2013 tktools drwxr-xr-x 35 root root 4096 Mar 1 2013 trctrain -rw-r--r-- 1 root root 50 Mar 1 2013 VERSION -rw-r--r-- 1 root root 25944 Mar 1 2013 WMParcStatsLUT.txt saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$ cd subject1/mri bash: cd: subject1/mri: No such file or directory saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$ tkmedit -f rawavg.mgz /usr/local/freesurfer/tktools/tkmedit.bin: Command not found. saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$ //===================================================================// I m working on laptop where as in other desktop in our lab its working fine. What should be the problem...? cheers Saurabh Thakur
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