Also, are you running it with a T1 input or a T2? The file name looks
like it might be a T2.
On 4/10/2020 10:12 AM, Bruce Fischl wrote:
Hi David
did you check the skull stripping as suggested? Seems like the input
volume given to the CC finder was empty. Work backwards and find the
earliest
Hi David
did you check the skull stripping as suggested? Seems like the input
volume given to the CC finder was empty. Work backwards and find the
earliest volume where something is wrong
cheers
Bruce
On Fri, 10 Apr 2020, David
Schwantner wrote:
External Email - Use Caution
Hi Vin
are you sure you have space on that disk? Can you run:
mri_info /home/Downloads/reorient/test.nii
mri_info /media/results/mri/orig/001.mgz
ls -l /media/results/mri/orig/001.mgz /media/results/mri/rawavg.mgz
and send us the results?
cheers
Bruce
On Thu, 25 Jul 2019,
vin rasa wrote:
External Email - Use Caution
Please also find recon-all.log file.
Thanks!
On Thu, Jul 25, 2019 at 6:50 AM vin rasa wrote:
> Dear Freesurfer experts,
> Greetings!
>
>
> In the first minute of recon-all, we are getting following error:
>
> mghRead(/media/results/mri/rawavg.mgz):
ure out
why they're not saving on our own.
Thanks for your help!
Phil
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Marie Schaer
Sent: Wednesday, August 26, 2015 2:19 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Error running recon
paths (line 93)
reorglist = reorganize_verticeslist (mesh_total, A, mesh_outer, perim,
verticeslist, step);
}
>>
ERROR: make_roi_paths did not complete successfully!
Linux KOENIGS-PC1 2.6.32-5-amd64 #1 SMP Wed Jun 17 16:09:06 UTC 2015 x86_64
GNU/Linux
recon-all -s M87100094 exited with ERRORS
total, A, mesh_outer, perim,
verticeslist, step);
}
>>
ERROR: make_roi_paths did not complete successfully!
Linux KOENIGS-PC1 2.6.32-5-amd64 #1 SMP Wed Jun 17 16:09:06 UTC 2015 x86_64
GNU/Linux
recon-all -s M87100094 exited with ERRORS at Wed Aug 26 09:56:37 CDT 2015
To report a p
Hi Philip,
Can you send me the full recon-all.log for this subject so that I can see also
matlab version and whether other vertices ran or if it crashed on the first one.
Thanks,
Marie
On Aug 26, 2015, at 8:00 AM, Philip Deming
mailto:pdem...@wisc.edu>> wrote:
Hi Freesurfer Support,
I pos
Hi Antonella
we usually view the ?h.white and ?h.pial surfaces over the norm.mgz and
the aseg.mgz and check them all for accuracy. If things are not where you
think they should be, then you need to take one of the interventions
documented on the wiki.
cheers
Bruce
On Wed, 22 Jun 2011, Antone
