Re: [Freesurfer] AFNI /freesurfer aseg files problem

2008-07-28 Thread Liat Levita
}_FC_Seed_aseg_fs_AMY_stats_ni_pi_Final+orig -dxyz 3 -suffix _at3 end - Original Message - From: Doug Greve <[EMAIL PROTECTED]> Date: Monday, July 28, 2008 1:07 pm Subject: Re: [Freesurfer] AFNI /freesurfer aseg files problem > > I would suspect that something happe

Re: [Freesurfer] AFNI /freesurfer aseg files problem

2008-07-28 Thread Liat Levita
- Original Message - From: Doug Greve <[EMAIL PROTECTED]> Date: Monday, July 28, 2008 1:37 pm Subject: Re: [Freesurfer] AFNI /freesurfer aseg files problem > Sorry, don't know anything about those commands. You're probably > better > off registering the fu

Re: [Freesurfer] AFNI /freesurfer aseg files problem

2008-07-28 Thread Anthony Dick
: Hi Doug, I just checked, yes they are. Liat PS. I attached the Info files to this message. - Original Message - From: Doug Greve <[EMAIL PROTECTED]> Date: Monday, July 28, 2008 12:16 pm Subject: Re: [Freesurfer] AFNI /freesurfer aseg files problem are you sure that t1

Re: [Freesurfer] AFNI /freesurfer aseg files problem

2008-07-28 Thread Doug Greve
Monday, July 28, 2008 1:07 pm Subject: Re: [Freesurfer] AFNI /freesurfer aseg files problem I would suspect that something happened when you converted to afni format. The aseg starts out at 1mm3, 256^3, but it appears to be 3mm3, 54x64x50. These conversions are quit tricky and easy to get wrong.

Re: [Freesurfer] AFNI /freesurfer aseg files problem

2008-07-28 Thread Doug Greve
: Hi Doug, I just checked, yes they are. Liat PS. I attached the Info files to this message. - Original Message - From: Doug Greve <[EMAIL PROTECTED]> Date: Monday, July 28, 2008 12:16 pm Subject: Re: [Freesurfer] AFNI /freesurfer aseg files problem are you sure that t1rc an

Re: [Freesurfer] AFNI /freesurfer aseg files problem

2008-07-28 Thread Liat Levita
Hi Doug, I just checked, yes they are. Liat PS. I attached the Info files to this message. - Original Message - From: Doug Greve <[EMAIL PROTECTED]> Date: Monday, July 28, 2008 12:16 pm Subject: Re: [Freesurfer] AFNI /freesurfer aseg files problem > are you sure that t1rc

Re: [Freesurfer] AFNI /freesurfer aseg files problem

2008-07-28 Thread Doug Greve
are you sure that t1rc and pscA are the same dimension? Remember, freesurfer resamples everything into 1mm3, 256^3 doug Liat Levita wrote: Hello, I wonder if anyone using AFNI converted freesurfer files has come across this problem (or can tell me if I making an error somewhere that I am ju