Re: [Freesurfer] tracula and libnetcdf

2014-04-04 Thread Anastasia Yendiki
Hi Satra - We've been talking about a 5.3.1, yes. On my end, it would include the tracula updates that are currently available and possibly some more (I've been working on some improvements to longitudinal tracula). Not sure about libnetcdf but this is a good time to add things to the wish l

Re: [Freesurfer] tracula and libnetcdf

2014-04-04 Thread Satrajit Ghosh
hi folks, we are setting up freesurfer on a new cluster and trying to be as modular as possible in terms of dependencies. at present we are only installing 5.3.0 + tracula updates. will libnetcdf (required by tracula) be included in freesurfer? or is it considered a dependency? and talking of wh

Re: [Freesurfer] tracula and libnetcdf

2014-02-05 Thread Satrajit Ghosh
update: the lack of libnetcdf eventually makes it fail. i found a libnetcdf.so.7 on the cluster and soft linked it to libnetcdf.so.6 and added the path to LD_LIBRARY_PATH. that let trac-all -prep run to completion. cheers, satra On Wed, Feb 5, 2014 at 9:02 PM, Satrajit Ghosh wrote: > hi a.y

[Freesurfer] tracula and libnetcdf

2014-02-05 Thread Satrajit Ghosh
hi a.y., when running trac-preproc i'm getting this error (for dmri_motion and dmri_group), but it continues running: /software/freesurfer/bin/dmri_motion: error while loading shared libraries: libnetcdf.so.6: cannot open shared object file: No such file or directory what will this fail to do?