hi folks, we are setting up freesurfer on a new cluster and trying to be as modular as possible in terms of dependencies. at present we are only installing 5.3.0 + tracula updates.
will libnetcdf (required by tracula) be included in freesurfer? or is it considered a dependency? and talking of which, is there a patch (a 5.3.1) in the horizon which will include the tracula updates and perhaps netcdf in the freesurfer download. cheers, satra On Wed, Feb 5, 2014 at 11:07 PM, Satrajit Ghosh <sa...@mit.edu> wrote: > update: the lack of libnetcdf eventually makes it fail. > > i found a libnetcdf.so.7 on the cluster and soft linked it to > libnetcdf.so.6 and added the path to LD_LIBRARY_PATH. > > that let trac-all -prep run to completion. > > cheers, > > satra > > > On Wed, Feb 5, 2014 at 9:02 PM, Satrajit Ghosh <sa...@mit.edu> wrote: > >> hi a.y., >> >> when running trac-preproc i'm getting this error (for dmri_motion and >> dmri_group), but it continues running: >> >> /software/freesurfer/bin/dmri_motion: error while loading shared >> libraries: libnetcdf.so.6: cannot open shared object file: No such file or >> directory >> >> what will this fail to do? >> >> also is libnetcdf now a dependency for freesurfer? the reason i ask is >> that i'm running this on a remote cluster for which i don't have admin >> privileges. >> >> cheers, >> >> satra >> >> >
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