Re: [Freesurfer] retinotopy analysis viewing in Freesurfer 5

2012-02-16 Thread Douglas N Greve
freesurfer/fstast/bin is fine Maryam Vaziri Pashkam wrote: > Sorry Doug this is a very basic question, > Should I put the rtview file in the freesurfer/fstast/bin directory or > somewhere else? > > Thanks, > Maryam > > On Thu, Feb 16, 2012 at 3:57 PM, Douglas N Greve > mailto:gr...@nmr.mgh.harv

Re: [Freesurfer] retinotopy analysis viewing in Freesurfer 5

2012-02-16 Thread Maryam Vaziri Pashkam
Sorry Doug this is a very basic question, Should I put the rtview file in the freesurfer/fstast/bin directory or somewhere else? Thanks, Maryam On Thu, Feb 16, 2012 at 3:57 PM, Douglas N Greve wrote: > rtview will give you the colorwheel, see if that works for you > doug > > Katie Bettencourt wr

Re: [Freesurfer] retinotopy analysis viewing in Freesurfer 5

2012-02-16 Thread Douglas N Greve
rtview will give you the colorwheel, see if that works for you doug Katie Bettencourt wrote: > Without the color wheel, how are you supposed to see the different > meridians so that you can draw the boundaries for visual areas? I > know that field sign can do that in occipital if you have polar

Re: [Freesurfer] retinotopy analysis viewing in Freesurfer 5

2012-02-16 Thread Katie Bettencourt
Without the color wheel, how are you supposed to see the different meridians so that you can draw the boundaries for visual areas? I know that field sign can do that in occipital if you have polar and eccen, but it doesn't work well with parietal retinotopy or if you don't have eccen data (which s

Re: [Freesurfer] retinotopy analysis viewing in Freesurfer 5

2012-02-16 Thread Douglas N Greve
Hi Katie, the color wheel became difficult to support (and I think it is inferior for viewing for various reasons). There is an alternative called rtview. It is not in the distribution, but you can get it from ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/rtview Look at the --he

[Freesurfer] retinotopy analysis viewing in Freesurfer 5

2012-02-15 Thread Katie Bettencourt
I have a question about the retinotopy analysis in freesurfer 5. I was following these instructions : http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastIndividualRetinotopyAnalysis with some minor edits because we don't have eccen data. And now I'm ready to view the data, but I'm confused by what I