2surf to do it)
>
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu
> on behalf of Greve, Douglas
> N.,Ph.D.
> *Sent:* Tuesday, May 21, 2019 10:31:57 AM
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* Re: [Freesurfer] problem with mri_su
e command)
>
>
>
>
>
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu
> on behalf of Greve, Douglas
> N.,Ph.D.
> *Sent:* Monday, May 20, 2019 2:56:38 PM
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* Re: [Freesurfer] problem with mri_surfcluster
> Whe
gt; *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* Re: [Freesurfer] problem with mri_surfcluster
> How did you choose thresholds of 1 and 49.95? In general, you don't need
> to set --thmax. If you input is a binary mask, then you should set
> --thmin to somethiing below 1 (eg
.,Ph.D.
Sent: Monday, May 20, 2019 2:46:54 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] problem with mri_surfcluster
How did you choose thresholds of 1 and 49.95? In general, you don't need
to set --thmax. If you input is a binary mask, then you should set
--thmin to somet
How did you choose thresholds of 1 and 49.95? In general, you don't need
to set --thmax. If you input is a binary mask, then you should set
--thmin to somethiing below 1 (eg, 0.5)
On 5/20/19 2:40 PM, Barletta, Valeria wrote:
>
> Dear Freesurfers,
>
> I am trying to obtain clusters of vertices wh
Dear Freesurfers,
I am trying to obtain clusters of vertices whit a certain value over a
threshold inside a lesion mask projected to the surface, with the command:
mri_surfcluster --subject MS075_R01_07_R1year --hemi lh --in
lh.MS075_R01_07_R1year.subjspace.mgh --surf lh.pial --mask
lh.surf_m
Hi Elizabeth, when FS computes a p-value, it computes assuming an
unsigned test. When you specify a sign to mri_surfcluster (eg, --sign
pos), it recomputes the p-value to take advantage of the signed test
(divides the p-value by 2, same as lowing the threshold from 2 to 1.7.
So try using 1.7 in
Hi all,
We're trying to create labels from a group level sig.mgh file. However,
after the labels are created and an annotation file/color table is made, we
try to view the sig.mgh file and the annotation file in tksurfer, but they
don't extactly overlap, even though they are both configured to the
