Dear Freesurfers, I am trying to obtain clusters of vertices whit a certain value over a threshold inside a lesion mask projected to the surface, with the command:
mri_surfcluster --subject MS075_R01_07_R1year --hemi lh --in lh.MS075_R01_07_R1year.subjspace.mgh --surf lh.pial --mask lh.surf_magn_CL02_fwhm1.mgh --thmax 49.95807 --thmin 1 --sign pos --minarea 0.01 --sum summary.txt But I obtain this result saying there are no vertices in my mask. thsign = pos, id = 1 version $Id: mri_surfcluster.c,v 1.51.2.3 2012/05/31 22:10:05 greve Exp $ hemi = lh srcid = /autofs/space/alicudi_002/users/mscat/users/valeria/2017_CME_MTR_PET/2017_MTR_PET/GLM0.7/49_subjects/CME_all/lh.MS075_R01_07_R1year.subjspace.mgh srcsubjid = MS075_R01_07_R1year srcsurf = lh.pial srcframe = 0 thsign = pos thmin = 1 thmax = 49.9581 fdr = -1 minarea = 0.01 xfmfile = talairach.xfm nth = -1 sumfile = /autofs/space/alicudi_002/users/mscat/users/valeria/2017_CME_MTR_PET/2017_MTR_PET/GLM0.7/49_subjects/SINGLE_LESION/MS075_R01_07_R1year/summary.txt subjectsdir = /autofs/space/alicudi_002/users/mscat/users/caterina/3T/recons_fsv5.3 FixMNI = 1 Found 0 vertices in mask Can you help me figure out why? Thanks, Vale
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