edu
On Behalf Of Lauri Tuominen
Sent: Friday, January 13, 2023 12:29 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] mris_convert to gifti
External Email - Use Caution
Dear Freesurfer experts,
A quick question. I am trying to convert my cortical thickness analysis result
External Email - Use Caution
Dear Freesurfer experts,
A quick question. I am trying to convert my cortical thickness analysis results
into a gifti file preferably combining left and right, like so:
mris_convert --combinesurfs lh.gamma.mgh rh.gamma.mgh both.gamma.gii
I get th
Mike,
Hi, a new mris_convert I’ve posted to the ftp site corrects this problem. It
will now store the volume geometry info into two giiCoordSys structs, which an
updated freeview will be able to read. mris_convert is here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos
Yes the HCP pipelines have to take care of this as well so that the
surfaces and volume align outside of FreeSurfer.
Peace,
Matt.
On 5/27/14, 8:35 AM, "Franz Liem" wrote:
>Hi Michael,
>
>I had a similar problem a while ago. Maybe this might help.
>http://www.mail-archive.com/freesurfer%40nmr.m
Hi Michael,
I had a similar problem a while ago. Maybe this might help.
http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg31152.html
Best,
Franz
Am 23.05.2014 um 05:38 schrieb Harms, Michael:
>
> Hi,
> I converted a surface to GIFTI
> e.g.,
> mris_convert lh.white lh.white.gii
>
Hi,
I converted a surface to GIFTI
e.g.,
mris_convert lh.white lh.white.gii
lh.white and lh.white.gii align when they are both loaded in 'tkmedit'.
However, they do not align when loaded simultaneously in 'freeview'.
Of possible relevance: When I loaded lh.white.gii into 'freeview', I got
