Mike, Hi, a new mris_convert I’ve posted to the ftp site corrects this problem. It will now store the volume geometry info into two giiCoordSys structs, which an updated freeview will be able to read. mris_convert is here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/ and the newest freeview.bin, updated daily, is here: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/freeview/ Nick On May 22, 2014, at 11:38 PM, Harms, Michael <mha...@wustl.edu> wrote: > > Hi, > I converted a surface to GIFTI > e.g., > mris_convert lh.white lh.white.gii > > lh.white and lh.white.gii align when they are both loaded in 'tkmedit'. > However, they do not align when loaded simultaneously in 'freeview'. > > Of possible relevance: When I loaded lh.white.gii into 'freeview', I got the > following message in the terminal: > "Did not find any volume geometry information in the surface" > > Is this possibly a bug of some sort in the display of GIFTI surfaces within > 'freeview'? > > This was all done with FS 5.3. > > thanks, > -MH > > -- > Michael Harms, Ph.D. > ----------------------------------------------------------- > Conte Center for the Neuroscience of Mental Disorders > Washington University School of Medicine > Department of Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 > St. Louis, MO 63110 Email: mha...@wustl.edu > > > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
