Yes the HCP pipelines have to take care of this as well so that the surfaces and volume align outside of FreeSurfer.
Peace, Matt. On 5/27/14, 8:35 AM, "Franz Liem" <f.l...@psychologie.uzh.ch> wrote: >Hi Michael, > >I had a similar problem a while ago. Maybe this might help. >http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg31152.html > >Best, >Franz > >Am 23.05.2014 um 05:38 schrieb Harms, Michael: > >> >> Hi, >> I converted a surface to GIFTI >> e.g., >> mris_convert lh.white lh.white.gii >> >> lh.white and lh.white.gii align when they are both loaded in 'tkmedit'. >> However, they do not align when loaded simultaneously in 'freeview'. >> >> Of possible relevance: When I loaded lh.white.gii into 'freeview', I >>got the following message in the terminal: >> "Did not find any volume geometry information in the surface" >> >> Is this possibly a bug of some sort in the display of GIFTI surfaces >>within 'freeview'? >> >> This was all done with FS 5.3. >> >> thanks, >> -MH >> >> -- >> Michael Harms, Ph.D. >> ----------------------------------------------------------- >> Conte Center for the Neuroscience of Mental Disorders >> Washington University School of Medicine >> Department of Psychiatry, Box 8134 >> 660 South Euclid Ave. Tel: 314-747-6173 >> St. Louis, MO 63110 Email: mha...@wustl.edu >> >> >> >> The materials in this message are private and may contain Protected >>Healthcare Information or other information of a sensitive nature. If >>you are not the intended recipient, be advised that any unauthorized >>use, disclosure, copying or the taking of any action in reliance on the >>contents of this information is strictly prohibited. If you have >>received this email in error, please immediately notify the sender via >>telephone or return mail. >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom >>it is >> addressed. If you believe this e-mail was sent to you in error and the >>e-mail >> contains patient information, please contact the Partners Compliance >>HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >>in error >> but does not contain patient information, please contact the sender and >>properly >> dispose of the e-mail. > > >_______________________________________________ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
