It cannot read the .w file as input. There is no need to use .w files
(despite what it might say).
On 12/03/2014 12:22 AM, wangzhiwei3233 wrote:
> *The command I used is* /mri_surfcluster --in sig.w --subject
> fsaverage --hemi lh --annot aparc --sign pos --minarea 30 --sum
> area100.pos.cluste
The command I used is mri_surfcluster --in sig.w --subject fsaverage --hemi lh
--annot aparc --sign pos --minarea 30 --sum area100.pos.cluster.summary --o
area100.pos.cluster.w --thmin 1.3
Teriminal output is
thsign = pos, id = 1
version $Id: mri_surfcluster.c,v 1.51.2.1 2011/03/28 15:32:36 g
That is the right command line. What is the terminal output?
On 12/2/14 8:01 AM, wangzhiwei3233 wrote:
Hi Freesurfer experts,
I just want to try cluster level threshold by cluster size, but
not by mc simulation.
So I tried the command like : mri_surfcluster --in sig.nii.gz
--subject f
Hi Freesurfer experts,
I just want to try cluster level threshold by cluster size, but not by mc
simulation.
So I tried the command like : mri_surfcluster --in sig.nii.gz --subject
fsaverage --hemi lh --annot aparc --sign pos --minarea 50 --sum
area50.pos.cluster.summary --o area50.pos.
Looks like it's working again!
Thanks for fixing it, Doug, and for pointing out that it was fixed, Pratap!
-Lauren
On Fri, Jan 9, 2009 at 3:54 PM, Kara Dyckman wrote:
> Thanks Pratap,
> I'll try it again.
> Kara
>
> Pratap Kunwar wrote:
>>
>> Kara and Lauren,
>>
>> I think Doug has fixed this pr
Thanks Pratap,
I'll try it again.
Kara
Pratap Kunwar wrote:
Kara and Lauren,
I think Doug has fixed this problem. i had similar problem but it is
working now.
pratap
Hi Lauren (and Doug),
I'm having the same issue. I ran montecarlo simulations on Friday and
then
tried to use the re
Kara and Lauren,
I think Doug has fixed this problem. i had similar problem but it is
working now.
pratap
> Hi Lauren (and Doug),
>> I'm having the same issue. I ran montecarlo simulations on Friday and
>> then
>> tried to use the results in mri_surfcluster. It ran, but I also got the
>> same
Hi Lauren (and Doug),
I'm having the same issue. I ran montecarlo simulations on Friday and then
tried to use the results in mri_surfcluster. It ran, but I also got the
same CWP values (-0.1) for each cluster in the sum file.
Also, when it runs, it gives a CEPHES ERROR. Here is what I get
Hi Everyone,
I'm having a bit of a problem with mri_surfcluster. I ran it alright
last week on the right hemisphere, and now am unable to get it to run
through with the left.
First I'm running mri_glmfit to get .csd files with 1 iterations
(split into 10 runs to speed things up), and then I'm r
hi,
i am having a strange problem with mri_surfcluster.
i give it the following command line:
mri_surfcluster --in
/disks/gpfs/fmri/emily.permutations/correlation.permutations/perm.mghs/2.lh.ccf.perm.smooth6.mgh
--subject fsaverage --hemi lh --thmin 0.5 --thmax 1.0 --sign pos --minarea 6
--sum
/
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