Re: [Freesurfer] mri_convert problems

2006-03-23 Thread Inge K. Amlien
Hi Bruce and Karsten, the volume looks much better in nICE, that is why we thought it was odd. I have no idea why the log says 130 files found, there is clearly 128 files in that folder. I will process it further and see how it works out. Thanks and have a nice day Inge > The log say's that it ha

Re: [Freesurfer] mri_convert problems

2006-03-23 Thread karsten . specht
Hi Inge, > When trying to convert some new scans with mri_convert there seems to be a > problem with the reconstruction, also the signal intensity is in the > 300-500 range. See attached image. It does not return any errors. > > Could someone please point me in the right direction here? The log

Re: [Freesurfer] mri_convert problems

2006-03-23 Thread Bruce Fischl
is there an error? It looks like it converted fine. The signal intensities are essentially arbitrary until the intensity normalization. The volume looks okay (the lines in it are from reslicing it into standard RAS coordinates). Did you process it further? cheers, Bruce On Thu, 23 Mar 2006 [E