Hi Bruce and Karsten, the volume looks much better in nICE, that is why we thought it was odd. I have no idea why the log says 130 files found, there is clearly 128 files in that folder. I will process it further and see how it works out.
Thanks and have a nice day Inge > The log say's that it has found 130 dcm files, which is two files too much > for a 128slice sequence, as nICE is saying. So, perhaps there is something > in the folder, which should not be there, even though mri_convert also > detectes that the sequence had originally 128 slices, but this might have > produced this offset in the images. > > How does the volume look likes, when you are looding it into nICE? > > > Best reagrds, > > Karsten > is there an error? It looks like it converted fine. The signal intensities > are essentially arbitrary until the intensity normalization. The volume > looks okay (the lines in it are from reslicing it into standard RAS > coordinates). Did you process it further? > > cheers, > Bruce > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
