From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> On
Behalf Of Francesco LomiSent: Thursday, February 8, 2024 11:44
AMTo: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu>Subject: Re: [Freesurfer] mpr2mni305
failed External Email -
Use
mber 24, 2018 at 8:14 AM
To: Freesurfer support list
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] mpr2mni305 failed, during recon-all
External Email - Use Caution
good to hear. looking forward to it. any estimation as to when it will be ready?
Shachar
On M
c 23, 2018, 16:56 Glasser, Matthew wrote:
>>
>>> External Email - Use Caution
>>>
>>> Is that FreeSurfer 5.3?
>>>
>>> Matt.
>>>
>>> From: on behalf of Shachar Gal
>>>
>>> Reply-To: Freesurfer suppo
: Freesurfer support list
mailto:freesurfer@nmr.mgh.harvard.edu>>
Date: Monday, December 24, 2018 at 3:12 AM
To: Freesurfer support list
mailto:freesurfer@nmr.mgh.harvard.edu>>
Cc: Ido Tavor mailto:idota...@gmail.com>>, Niv Tik
mailto:niv...@gmail.com>>
Subject: Re: [Freesurfer]
gt;
>> Matt.
>>
>> From: on behalf of Shachar Gal <
>> gal.shac...@gmail.com>
>> Reply-To: Freesurfer support list
>> Date: Sunday, December 23, 2018 at 8:35 AM
>> To: Freesurfer support list
>> Subject: Re: [Freesurfer] mpr2mni305 failed, during recon
Sunday, December 23, 2018 at
8:35 AMTo: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu>Subject: Re: [Freesurfer] mpr2mni305
failed, during
recon-allExternal Email - Use
Cautionthis is my Freesurfer
version - freesurfer-i386-apple-darwin10.8.0-stable5-20130513an
rom: on behalf of Shachar Gal <
> gal.shac...@gmail.com>
> Reply-To: Freesurfer support list
> Date: Sunday, December 23, 2018 at 8:35 AM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] mpr2mni305 failed, during recon-all
>
> External Email - Use Caution
December 23, 2018 at 8:35 AM
To: Freesurfer support list
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] mpr2mni305 failed, during recon-all
External Email - Use Caution
this is my Freesurfer version -
freesurfer-i386-apple-darwin10.8.0-stable5-20130513
and I t
-To: Freesurfer support list
> Date: Sunday, December 23, 2018 at 8:24 AM
> To: "freesurfer@nmr.mgh.harvard.edu"
> Subject: [Freesurfer] mpr2mni305 failed, during recon-all
>
> External Email - Use Caution
>
> hello,
> I'm running the hcp's FreeSurf
o:freesurfer@nmr.mgh.harvard.edu>>
Date: Sunday, December 23, 2018 at 8:24 AM
To: "freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>"
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: [Freesurfer] mpr2mni305 failed, during recon-all
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External Email - Use Caution
hello,
I'm running the hcp's FreeSurfer pipeline, and for some reason, after
working successfully several times, on different subjects, im getting this
error:
***
/Users/georgieboy/Research/Piano/test/222/222/mri
\n mri_nu_correct.mni --n 1 --proto-iter
Hi
I have run recon-all successfully in the past, but now I am getting an error of
mpr2mni305 failed, see transforms/talairach_avi.log. I'm running
freesurfer-Darwin-lion-stable-pub-v5.3.0 on a Mac 10.10.5.
This issue appears the same as a recent post
http://www.mail-archive.com/freesurfer%40n
Hi everyone,
I try the recon all procedure on an average subject from SPM canonical database.
I have the following error : ERROR: mpr2mni305 failed.
How could I solve it?
Thanks for help,
Gabriela Hossu
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what does the rawavg.mgz look like? If it is ok, can you email it to us?
On
Fri, 8 Aug 2014, Francesco Deleo wrote:
Thank you all for attention and help!
Maybe we're finding the problem: in cases I received the mpr2mni305 error
the orig.mgz is unintelligible (it is white with some black point)
Thank you all for attention and help!
Maybe we're finding the problem: in cases I received the mpr2mni305 error
the orig.mgz is unintelligible (it is white with some black point). But my
dicoms are ok (I've checked!). I've already tried converting dicom to tiff
but I got the same error message and
Have you looked in transforms/talairach_avi.log?
On 08/07/2014 07:57 AM, Francesco Deleo wrote:
> Thank you Doug!
> but i tried it in many cases but I've always received the same error
> message...
> Is there something else I can try?
>
> Francesco
>
>
> 2014-08-07 0:46 GMT+02:00 Douglas N Greve
Hi Franesco
can you post an image of the scan you are trying to run through
recon-all? And give us some idea of what it is (resolution,
etc...)? Something is badly wrong if they are all failing. You can also
upload the orig.mgz of one of them and we will take a look if you want.
cheers
Bruce
Thank you Doug!
but i tried it in many cases but I've always received the same error
message...
Is there something else I can try?
Francesco
2014-08-07 0:46 GMT+02:00 Douglas N Greve :
> Try it with -notal-check
> doug
>
> On 08/06/2014 04:39 PM, Francesco Deleo wrote:
> > I all!
> >
> > I am a
Try it with -notal-check
doug
On 08/06/2014 04:39 PM, Francesco Deleo wrote:
> I all!
>
> I am a new freesurfer user.
> I have a problem when I perform the recon-all -all, in about 15% of
> MRI scans, all made with the same scanning protocol (T1 MPRAGE in a
> SIEMENS Avanto 1,5 T).
>
> I can't r
I all!
I am a new freesurfer user.
I have a problem when I perform the recon-all -all, in about 15% of MRI
scans, all made with the same scanning protocol (T1 MPRAGE in a SIEMENS
Avanto 1,5 T).
I can't recognize any difference between those scans which work correctly
and those not.
I have never f
I all!
I have the same problem in about 15% of MRI scans, all made with the same
scanning protocol (T1 MPRAGE in a SIEMENS Avanto 1,5 T) during the
recon-all -all process.
I can't recognize any difference between those scans which work correctly
and those not.
I have never found the same error on
Hi All,
I am getting the the following error when I run recon-all -subjid E368
-autorecon1
ERROR: mpr2mni305 failed, see transforms/talairach_avi.log
Here is what talairach_avi.log says
/home/administrator/Desktop/freesurfer/subjects_dir/E368/mri
/usr/local/freesurfer/bin/talairach_avi
--i orig
Hi Freesurfers,We are using version 5.1.0, and have two subjects failed at the talairach_avi step. I have attached the talairach_avi.log for your reference.Thanks,Zheng Hui
talairach_avi.log
Description: talairach_avi.log
talairach_avi.log
Description: talairach_avi.log
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