External Email - Use Caution Sorry, out of the office for the day. I'll get back to you about it tomorrow
Shachar On Sun, Dec 23, 2018, 16:56 Glasser, Matthew <glass...@wustl.edu> wrote: > External Email - Use Caution > > Is that FreeSurfer 5.3? > > Matt. > > From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Shachar Gal < > gal.shac...@gmail.com> > Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Date: Sunday, December 23, 2018 at 8:35 AM > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Subject: Re: [Freesurfer] mpr2mni305 failed, during recon-all > > External Email - Use Caution > > this is my Freesurfer version - > freesurfer-i386-apple-darwin10.8.0-stable5-20130513 > > and I think the update to macOS Mojave was after successfully running the > pipeline. > you think this could be the issue? should I just upgrade my freesurfer? > > thanks > > On Sun, 23 Dec 2018 at 16:28, Glasser, Matthew <glass...@wustl.edu> wrote: > >> External Email - Use Caution >> >> Which version of FreeSurfer is this and did you do some OS upgrade in >> between? >> >> Matt. >> >> From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Shachar Gal < >> gal.shac...@gmail.com> >> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> >> Date: Sunday, December 23, 2018 at 8:24 AM >> To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu> >> Subject: [Freesurfer] mpr2mni305 failed, during recon-all >> >> External Email - Use Caution >> >> hello, >> I'm running the hcp's FreeSurfer pipeline, and for some reason, after >> working successfully several times, on different subjects, im getting this >> error: >> *** >> /Users/georgieboy/Research/Piano/test/222/222/mri >> \n mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale >> --i orig.mgz --o orig_nu.mgz \n >> \n talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm \n >> ERROR: mpr2mni305 failed, see transforms/talairach_avi.log >> Darwin medical613-6.tau.ac.il 18.2.0 Darwin Kernel Version 18.2.0: Fri >> Oct 5 19:41:49 PDT 2018; root:xnu-4903.221.2~2/RELEASE_X86_64 x86_64 >> >> recon-all -s 222 exited with ERRORS at Sun Dec 23 15:50:23 IST 2018 >> *** >> >> the information in the talairach_avi.log is as follows: >> >> *** >> dyld: Symbol not found: ___keymgr_global >> Referenced from: /Applications/freesurfer/bin/gauss_4dfp >> Expected in: /usr/lib/libSystem.B.dylib >> in /Applications/freesurfer/bin/gauss_4dfp >> Abort >> ERROR: 'gauss_4dfp talsrcimg 1.1' failed! status=134 >> ERROR: mpr2mni305 execution aborted >> *** >> >> to be clear, this - /usr/lib/libSystem.B.dylib exists exactly where is >> was expected... >> >> the input image, orig.mgz, looks fine and is in 1 mm res... >> so im having trouble getting to the bottom of the error. >> >> thanks in advance, >> Shachar >> >> >> ------------------------------ >> >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If you >> are not the intended recipient, be advised that any unauthorized use, >> disclosure, copying or the taking of any action in reliance on the contents >> of this information is strictly prohibited. If you have received this email >> in error, please immediately notify the sender via telephone or return mail. >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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