External Email - Use Caution this is my Freesurfer version - freesurfer-i386-apple-darwin10.8.0-stable5-20130513
and I think the update to macOS Mojave was after successfully running the pipeline. you think this could be the issue? should I just upgrade my freesurfer? thanks On Sun, 23 Dec 2018 at 16:28, Glasser, Matthew <glass...@wustl.edu> wrote: > External Email - Use Caution > > Which version of FreeSurfer is this and did you do some OS upgrade in > between? > > Matt. > > From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Shachar Gal < > gal.shac...@gmail.com> > Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Date: Sunday, December 23, 2018 at 8:24 AM > To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu> > Subject: [Freesurfer] mpr2mni305 failed, during recon-all > > External Email - Use Caution > > hello, > I'm running the hcp's FreeSurfer pipeline, and for some reason, after > working successfully several times, on different subjects, im getting this > error: > *** > /Users/georgieboy/Research/Piano/test/222/222/mri > \n mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale > --i orig.mgz --o orig_nu.mgz \n > \n talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm \n > ERROR: mpr2mni305 failed, see transforms/talairach_avi.log > Darwin medical613-6.tau.ac.il 18.2.0 Darwin Kernel Version 18.2.0: Fri > Oct 5 19:41:49 PDT 2018; root:xnu-4903.221.2~2/RELEASE_X86_64 x86_64 > > recon-all -s 222 exited with ERRORS at Sun Dec 23 15:50:23 IST 2018 > *** > > the information in the talairach_avi.log is as follows: > > *** > dyld: Symbol not found: ___keymgr_global > Referenced from: /Applications/freesurfer/bin/gauss_4dfp > Expected in: /usr/lib/libSystem.B.dylib > in /Applications/freesurfer/bin/gauss_4dfp > Abort > ERROR: 'gauss_4dfp talsrcimg 1.1' failed! status=134 > ERROR: mpr2mni305 execution aborted > *** > > to be clear, this - /usr/lib/libSystem.B.dylib exists exactly where is > was expected... > > the input image, orig.mgz, looks fine and is in 1 mm res... > so im having trouble getting to the bottom of the error. > > thanks in advance, > Shachar > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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