I found the fix. My subject list in my fsgd file had an extra forward slash
(i.e. WB101_1/). After deleting that forward slash, make_average_volume is
now running normally. I also deleted the forward slash from freesurfer/ for
the SUBJECTS env variable for consistency's sake.
On Sun, Feb 12, 2012
Thanks for your reply Bruce. I used:
export SUBJECTS_DIR=/study/NCCAM/Data/MRI/processed/structural/freesurfer/
make_average_subject --out average --fsgd mnp_ltm_v2.fsgd
On Sun, Feb 12, 2012 at 5:16 PM, Bruce Fischl wrote:
> can you give us the command line you used? And what the SUBJECTS env
>
can you give us the command line you used? And what the SUBJECTS env
variable was (if you used it)?
On Sun, 12 Feb 2012, Martina Ly
wrote:
Dear freesurfers, I am coming across an error in the beginning of
make_average_volume of make_average_subject where mri_convert fails.
make_average_surfa
Dear freesurfers,
I am coming across an error in the beginning of make_average_volume of
make_average_subject where mri_convert fails. make_average_surface finished
without a problem so hopefully that part will not need to be re-run. I've
check permissions, cpu space, paths but couldn't find anythi
