Dear freesurfers, I am coming across an error in the beginning of make_average_volume of make_average_subject where mri_convert fails. make_average_surface finished without a problem so hopefully that part will not need to be re-run. I've check permissions, cpu space, paths but couldn't find anything... Any help/suggestions would greatly appreciated. Below is the error message:
INFO: Applying transformation from file /study/NCCAM/Data/MRI/processed/structural/freesurfer//WB101_1//mri/transforms/talairach.xfm... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 1.156 0.062 0.028 -2.110; -0.102 1.113 0.318 -31.524; -0.029 -0.322 1.218 4.598; 0.000 0.000 0.000 1.000; INFO: Transform dst volume info is not used (valid flag = 0). INFO: assumes that the dst volume given is the same as the dst for the transform mghWrite(/study/NCCAM/Data/MRI/processed/structural/freesurfer//average/tmp/make_average_vol-tmp-2117/orig-WB101_1/.mgh, -1): could not open file --------------------------------- Applying LTAtransformInterp (resample_type 1) writing to /study/NCCAM/Data/MRI/processed/structural/freesurfer//average/tmp/make_average_vol-tmp-2117/orig-WB101_1/.mgh... ERROR: failure writing /study/NCCAM/Data/MRI/processed/structural/freesurfer//average/tmp/make_average_vol-tmp-2117/orig-WB101_1/.mgh /study2/NCCAM/Data/MRI/processed/structural/freesurfer ERROR: mri_convert failed. Many thanks in advance, Martina
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