can you give us the command line you used? And what the SUBJECTS env
variable was (if you used it)?
On Sun, 12 Feb 2012, Martina Ly
wrote:
Dear freesurfers, I am coming across an error in the beginning of
make_average_volume of make_average_subject where mri_convert fails.
make_average_surface finished without a problem so hopefully that part will
not need to be re-run. I've check permissions, cpu space, paths but couldn't
find anything... Any help/suggestions would greatly appreciated. Below is
the error message:
INFO: Applying transformation from
file/study/NCCAM/Data/MRI/processed/structural/freesurfer//WB101_1//mri/transfo
rms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
1.156 0.062 0.028 -2.110;
-0.102 1.113 0.318 -31.524;
-0.029 -0.322 1.218 4.598;
0.000 0.000 0.000 1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: assumes that the dst volume given is the same as the dst for the
transform
mghWrite(/study/NCCAM/Data/MRI/processed/structural/freesurfer//average/tmp
/make_average_vol-tmp-2117/orig-WB101_1/.mgh, -1): could not open file
---------------------------------
Applying LTAtransformInterp (resample_type 1)
writing
to/study/NCCAM/Data/MRI/processed/structural/freesurfer//average/tmp/make_ave
rage_vol-tmp-2117/orig-WB101_1/.mgh...
ERROR: failure
writing/study/NCCAM/Data/MRI/processed/structural/freesurfer//average/tmp/make_ave
rage_vol-tmp-2117/orig-WB101_1/.mgh
/study2/NCCAM/Data/MRI/processed/structural/freesurfer
ERROR: mri_convert failed.
Many thanks in advance,
Martina
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
