Re: [Freesurfer] load overlay in TkSurfer

2004-11-17 Thread Doug Greve
On Wed, 17 Nov 2004, Joongnam Yang wrote: > Thanks, Kevin > So, I guess there is nothing special about retinotopy data, but the > functionl overlay > that I got doesn't look right. (not much activation) > > Here is the two steps that I've done for the functional data before I > overlay it onto a

Re: [Freesurfer] load overlay in TkSurfer

2004-11-17 Thread Kevin Teich
Thanks, Kevin So, I guess there is nothing special about retinotopy data, but the functionl overlay that I got doesn't look right. (not much activation) Have you tried playing with the thresholds, in the View->Configure->Functional Overlay dialog? I'm not sure if they will be set up properly for

Re: [Freesurfer] load overlay in TkSurfer

2004-11-17 Thread Joongnam Yang
Thanks, Kevin So, I guess there is nothing special about retinotopy data, but the functionl overlay that I got doesn't look right. (not much activation) Here is the two steps that I've done for the functional data before I overlay it onto anatomical data. Any comments are appreciated. 1. use "

Re: [Freesurfer] load overlay in TkSurfer

2004-11-17 Thread Joongnam Yang
Hi Bruce, I found the error messages in SUBJECTID/scripts/csurf.log The error was that there is no talairach.xfm in /mri/transorms directory. I though that using tkregister2 for co-registration would be enough. Would you let me know how to generate talairach.xfm? Nam. __

Re: [Freesurfer] load overlay in TkSurfer

2004-11-17 Thread Bruce Fischl
h, I'll leave this for Kevin. Bruce On Wed, 17 Nov 2004, Joongnam Yang wrote: > The following is in .xdebug_tksurfer. > > Segfault > > > xDebug stack (length: 1) > 00: > 00: >

Re: [Freesurfer] load overlay in TkSurfer

2004-11-17 Thread Joongnam Yang
The following is in .xdebug_tksurfer. Segfault xDebug stack (length: 1) 00: 00: Segfault Does it ring a bell, Bruce? Nam.

Re: [Freesurfer] load overlay in TkSurfer

2004-11-17 Thread Bruce Fischl
Hi Nam, can you exit tksurfer and look in the file .xdebug_tksurfer to see if there are any error messages? cheers, Bruce On Wed, 17 Nov 2004, Joongnam Yang wrote: > The "Load Overlay" window in TkSurfer is not working for me. > The window has two fileds to fill in, "Load Overlay" and "User > R

[Freesurfer] load overlay in TkSurfer

2004-11-17 Thread Joongnam Yang
The "Load Overlay" window in TkSurfer is not working for me. The window has two fileds to fill in, "Load Overlay" and "User Registration". What's strange is that whatever I type in those two fields, TkSurfer doesn't complain. For example, if I type in "hello" and "abc.dat" literally for those two f