Or try
mri_convert file.bhdr file.nii
On 08/06/2012 09:30 AM, Bruce Fischl wrote:
> Hi Colin
>
> have you tried mri_convert? We did support bshort as a format (such as
> it is!), although it hasn't gotten much use for years. Try something
> like:
>
> mri_convert file.bshort file.nii
>
> cheers
>
Hi Colin
have you tried mri_convert? We did support bshort as a format (such as it
is!), although it hasn't gotten much use for years. Try something like:
mri_convert file.bshort file.nii
cheers
Bruce
On Sun, 5 Aug 2012,
Colin Reveley wrote:
also -
I'm assisting someone with a dti analy
also -
I'm assisting someone with a dti analysis.
the data I have is a martinos centre .hdr .bshort file, acquired at
martinos I think, in 2005.
I'm having trouble figuring out how to covert this (mainly for use with FSL)
I'd like a 4d nifti ultimately (or analyse).
I was thinking of writing code
you need to specify the full path with -i
On Tue, 27 Feb 2007, Lindsay
Casmaer wrote:
I am trying to run the first recon-all command on Seimens dicom files
to convert to mgz. I moved the files for each acquisition to a
separate directory ex: 001 002 003, 3 subdirectories each containing
the
You need to give it the full path to the file, eg 001/447-5-440.ima. I
have a feeling that this will also fail because it's going to think that
the .ima is the old siemens ima format. Let me know. Also, there's no
need to put the dicoms in separate directories as freesurfer can find
only those
I am trying to run the first recon-all command on Seimens dicom files
to convert to mgz. I moved the files for each acquisition to a
separate directory ex: 001 002 003, 3 subdirectories each containing
the files for each scan acquisition.
I then run the command
recon-all -i 447-5-440.ima -i 447-
hi gregory,
to address your last question: no, tksurfer does not require both
eccentricity and polar angle data to display either coordinate map by
itself. as bruce wrote, the convention is that the eccentricity and polar
angle data are each stored in two separate overlay or ".w" files. the ".w"
What is the nature of the complex data? Ie, what format is it in?
mri_vol2surf will convert shorts, ints, and floats, single and multiple
frames/timepoints, but it will not specifically handle complex. I was
not aware that any format could code complex, but maybe nifti can?
doug
Bruce Fischl
Hi Gregory,
I'l leave the mri_vol2surf to Doug, but basically we treat the components
separately - one file for the real and one for the imaginary. You should
convert each of them to a .w file. You can display either with a color
wheel in tksurfer. Jon Polimeni is the current expert on this st
We have complex-valued volumes (retinotopic mapping data) in
structural space (1,1,1mm)
We'd like to convert this to a surface overlay (.w)
Can mri_vol2surf handle complex data and can Freesurfer display this?
(with some sort of color wheel scheme)
Also, does freesurfer require both polar and e
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