Re: [Freesurfer] creating a skull

2012-09-04 Thread Bruce Fischl
M > To: Borzello, Mia > Cc: freesurfer > Subject: Re: [Freesurfer] creating a skull > > Hi Mia > > what platform are you running on? > > Bruce > On Fri, 31 Aug 2012, Borzello, Mia wrote: > >> I've been referred to the following link on the freesurfer site to handle

Re: [Freesurfer] creating a skull

2012-09-04 Thread Borzello, Mia
I'm using Unix. Should I try something else? Thanks, m From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Monday, September 03, 2012 2:45 PM To: Borzello, Mia Cc: freesurfer Subject: Re: [Freesurfer] creating a skull Hi Mia what platform ar

Re: [Freesurfer] creating a skull

2012-09-03 Thread Bruce Fischl
mail/fieldtrip/2012-January/004679.html > > thanks, > m > > From: Louis Nicholas Vinke [vi...@nmr.mgh.harvard.edu] > Sent: Friday, August 31, 2012 10:29 AM > To: Borzello, Mia > Cc: freesurfer > Subject: Re: [Freesurfer] crea

Re: [Freesurfer] creating a skull

2012-09-03 Thread Bruce Fischl
le or ascertain that it has an error? > > Thanks, > m > > From: Louis Nicholas Vinke [vi...@nmr.mgh.harvard.edu] > Sent: Friday, August 31, 2012 10:29 AM > To: Borzello, Mia > Cc: freesurfer > Subject: Re: [Freesurfer] creating a sk

Re: [Freesurfer] creating a skull

2012-09-03 Thread Bruce Fischl
y, August 31, 2012 12:17 PM > To: freesurfer > Subject: RE: [Freesurfer] creating a skull > > I've been referred to the following link on the freesurfer site to handle > this, but is this still current (i.e. is linux still needed to do this?): > http://mailman.science.ru.

Re: [Freesurfer] creating a skull

2012-09-03 Thread Borzello, Mia
Also, is there a way to create a skull from a CT scan? From: Borzello, Mia Sent: Friday, August 31, 2012 12:17 PM To: freesurfer Subject: RE: [Freesurfer] creating a skull I've been referred to the following link on the freesurfer site to handle this,

Re: [Freesurfer] creating a skull

2012-08-31 Thread Borzello, Mia
holas Vinke [vi...@nmr.mgh.harvard.edu] Sent: Friday, August 31, 2012 10:29 AM To: Borzello, Mia Cc: freesurfer Subject: Re: [Freesurfer] creating a skull Hi, You need to add an extension onto the file name, something like brain.mgz or brain.nii. The extension will tell it what format to save the o

Re: [Freesurfer] creating a skull

2012-08-31 Thread Borzello, Mia
e [vi...@nmr.mgh.harvard.edu] Sent: Friday, August 31, 2012 10:29 AM To: Borzello, Mia Cc: freesurfer Subject: Re: [Freesurfer] creating a skull Hi, You need to add an extension onto the file name, something like brain.mgz or brain.nii. The extension will tell it what format to save the output in. -Louis On Fr

Re: [Freesurfer] creating a skull

2012-08-31 Thread Louis Nicholas Vinke
Hi, You need to add an extension onto the file name, something like brain.mgz or brain.nii. The extension will tell it what format to save the output in. -Louis On Fri, 31 Aug 2012, Borzello, Mia wrote: > Hi freesurfer family, > > I am trying to create the inner skull boundary and ran: mri_wat

[Freesurfer] creating a skull

2012-08-31 Thread Borzello, Mia
Hi freesurfer family, I am trying to create the inner skull boundary and ran: mri_watershed -atlas - surf -useSRAS mri.nii brain However, after it finished running it said it was saving "brain", but "brain" was an unknown file type. Am i supposed to specify that somewhere? Thanks in advance, m